MEST049, MEST049 (genetic_marker) Malus sp. | GDR

Marker Overview

Marker Overview


Name	MEST049
Genbank ID	AB627218
Type	EST-SSR
Species	Malus x domestica
Repeat Motif	(TC)17
Primer 1	MEST049.forward primer: CCCTCCCACTTCTCGATACA
Primer 2	MEST049.reverse primer: GGATTTCCCGCCATATTTCT
Publication	[view all]
Contact	Shigeki Moriya

Contact

Name

Details

Shigeki Moriya

First name:	Shigeki
Last name:	Moriya
Title:	Researcher
Institution:	Apple Research StationNARO Institute of Fruit Tree Science
Address:	Apple Research Station, NARO Institute of Fruit Tree Science, Shimokuriyagawa, Morioka, Iwate 020-0123, Japan
Country:	Japan
Email:	moriyas@affrc.go.jp

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr04	chromosome	Chr04:30456744..30456971 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	GDR marker alignment to genome using primer sequences
chr4A	chromosome	chr4A:28892749..28892972 .	Malus x domestica ‘Honeycrisp’ Genome v1.1.a1 Assembly & Annotation	GDR marker alignment to genome using primer sequences

Publications


Year	Publication
2012	Moriya S, Iwanami H, Kotoda N, Haji T, Okada K, Terakami S, Mimida N, Yamamoto T, Abe K. Aligned genetic linkage maps of apple rootstock cultivar ‘JM7’ and Malus sieboldii ‘Sanashi 63’ constructed with novel EST-SSRs. Tree genetics & genomes. 2012; 8(4):709-723.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-JM7xS63-F1	J4	N/A	79	MEST049	View