JPsnpHou00352, JPsnpHou00352 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00352
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	AATACCAGAAGAATTATACGAAAGGGAAACATTTAAGGTGATAGTATTCCAAACCTTAAC TTTTGATCGGTTTGAAACGCTGACGTCATTAACTTAGGAGAGGATTATTAACTAAGTGAT TACATGGACTTATCACTCGTGCCATCGCATGATAAACAACACTTTTTCAAAGTACCAGCT GATCTCAAAGATCTGAGTAATAGTTTAACAACATAACATGTCACACGACAATAGACGATC TGATAAACGAGCTTTACAGACACAACAAAGACGCACAAACTCAATTCGCAAATTATACGT CGTTCGATTTATGATCGGTAGTGTGTAAAACCTACGTTGAAAACCTGTCTGTCATGAGGA GAAGAGTAGTCGATATCTGGCCCGCTAGGAATTATTCCGAATGGATTGATAGACGGATGG CTTCCGTAGTAGTGCCGCTTTATGTGATCCATGTTGACTGTGCTGCTCATCCCGGAACCT GGAAAATGTCTTTGGTGTAGTTGAACAAATTCGGGTATTCTCGTAGTACTTTCCAGTATA CTGGAAAGTACACGGTTCCAGTTCTATGGGATAAAAAAACTCAAAACAATTGTGAGTAAT GAGAGCGGGGAGATTATTCGCATGTTCAATACTGAATTCAACGATATAGCTGAAAATGCG TCTTTGGACTTATATCCTCCTCACTTGCAATCCCAAATTGATCAGACAAATGAATGGATA TATGACAAGATAAACAACGGTGTCTATAAATGCGGGTTTGCGAGGAAGCAAGAGCCTTAT GATGAGGCTGTGAAACAATTGTACGAAGCTTTGGATAAATGTGAGGAGATACTTAGCAAG CAACGATACCTGTGCGGGAACACATTGTCTGAAGCAGATATTCGGTTGTTTGTCACTCTT ATAAGATTCGACGAGGTTTACGTAGTCCACTTCAAGTGCAACAAGAAAGTACTACGAGAA TACCCGAATTTGTTCAACTACACCAAAGACATTTTCCAGGTTCCGGGGATGAGCAGCACA GTCAACATGGATCACATAAAGCGGCACTACTACGGAAGCCATCCGTCTATCAATCCATTC GGAATAATTCCTAGCGGGCCAGATATCGACTACTCTTCTCCTCATGACAGAAACAGGTTT TCGACGTAGGTTTTACACACTACCGATCATAAATCGAACGACGTATAATTTGCGAATTGA GTTTGTGCGTCTTTGTTGTGTCTGTAAAGCTCGTTTATCAGATC
3' Flanking Sequence	TCTATTGTCGTGTGACATGTTATGTTGTnAAACTATTACTCAGATCTTTGAGATCAGCTG GTACTTTGAAAGAGTGTTGTTTATCATGCGATGGCCACGAGTGATAAGTCCATGTAATCA CTTAGTTAATAATTCTCTCCGAAGATAATGACGTTGGCGTTTCAAACT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 1245

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG10	N/A	144.24	JPsnpHou00352	View

Sequence

>JPsnpHou00352 ID=JPsnpHou00352; Name=JPsnpHou00352; organism=Pyrus pyrifolia; type=genetic_marker; length=1413bp
AATACCAGAAGAATTATACGAAAGGGAAACATTTAAGGTGATAGTATTCC
AAACCTTAACTTTTGATCGGTTTGAAACGCTGACGTCATTAACTTAGGAG
AGGATTATTAACTAAGTGATTACATGGACTTATCACTCGTGCCATCGCAT
GATAAACAACACTTTTTCAAAGTACCAGCTGATCTCAAAGATCTGAGTAA
TAGTTTAACAACATAACATGTCACACGACAATAGACGATCTGATAAACGA
GCTTTACAGACACAACAAAGACGCACAAACTCAATTCGCAAATTATACGT
CGTTCGATTTATGATCGGTAGTGTGTAAAACCTACGTTGAAAACCTGTCT
GTCATGAGGAGAAGAGTAGTCGATATCTGGCCCGCTAGGAATTATTCCGA
ATGGATTGATAGACGGATGGCTTCCGTAGTAGTGCCGCTTTATGTGATCC
ATGTTGACTGTGCTGCTCATCCCGGAACCTGGAAAATGTCTTTGGTGTAG
TTGAACAAATTCGGGTATTCTCGTAGTACTTTCCAGTATACTGGAAAGTA
CACGGTTCCAGTTCTATGGGATAAAAAAACTCAAAACAATTGTGAGTAAT
GAGAGCGGGGAGATTATTCGCATGTTCAATACTGAATTCAACGATATAGC
TGAAAATGCGTCTTTGGACTTATATCCTCCTCACTTGCAATCCCAAATTG
ATCAGACAAATGAATGGATATATGACAAGATAAACAACGGTGTCTATAAA
TGCGGGTTTGCGAGGAAGCAAGAGCCTTATGATGAGGCTGTGAAACAATT
GTACGAAGCTTTGGATAAATGTGAGGAGATACTTAGCAAGCAACGATACC
TGTGCGGGAACACATTGTCTGAAGCAGATATTCGGTTGTTTGTCACTCTT
ATAAGATTCGACGAGGTTTACGTAGTCCACTTCAAGTGCAACAAGAAAGT
ACTACGAGAATACCCGAATTTGTTCAACTACACCAAAGACATTTTCCAGG
TTCCGGGGATGAGCAGCACAGTCAACATGGATCACATAAAGCGGCACTAC
TACGGAAGCCATCCGTCTATCAATCCATTCGGAATAATTCCTAGCGGGCC
AGATATCGACTACTCTTCTCCTCATGACAGAAACAGGTTTTCGACGTAGG
TTTTACACACTACCGATCATAAATCGAACGACGTATAATTTGCGAATTGA
GTTTGTGCGTCTTTGTTGTGTCTGTAAAGCTCGTTTATCAGATCrTCTAT
TGTCGTGTGACATGTTATGTTGTnAAACTATTACTCAGATCTTTGAGATC
AGCTGGTACTTTGAAAGAGTGTTGTTTATCATGCGATGGCCACGAGTGAT
AAGTCCATGTAATCACTTAGTTAATAATTCTCTCCGAAGATAATGACGTT
GGCGTTTCAAACT