|
Marker Overview
Name | JPsnpHou00630 |
dbSNP ID | N/A |
Type | SNP |
SNP Alleles | A/G |
5' Flanking Sequence | AGAGAGACATAATCCATCCGTCCACATTATATCAAAACTCACATAGGTCCCAAACCACAT
CAAATATCCACAATAACCATCACTTAGCTACCNTAAAAAATCGCTCACTCCTCAACCGCG
CTATTATTTTCGACTCGAAACTGGTTTTTCCTTGTTTATTAACATATAACGCAACAATTA
AGCCTCGGCGATCTCAGCGGATTCTGCAGCAGCTAGGATCAGCTCAGGCTGGATGCCTCC
GACGTATGATCCATCCAAAGCGTTGGGGAGTCCCAGTGCCTTTAATGCCAAGTGAGCTGC
CTTTTGCCCTGAGATCATCATGGCTCCGAATGTAGGTCCCATTCTTGGGGATCCATCAAT
CTCAGCAACTTCCATGCCGGTGACGATCATTCCTGGCACAATCACCCCATCTTATCATCT
TCTCTCTCTCTTTCTCTCGCATCAATCAATGGCAACCATGGCTTCCACCCTCACCTCCTC
CTCCCTCACCGCCAAGCTCCAGAAGTCCTCCCTCCTCGACTCCTCTTTCCATGGCGCTCC
CATGGTCCGCCTTCAGCCGGCCAAGGCGGCCCCCGCCAACAACGGCGGCCTCTCCGTCTC
CATGTCTGCCAACGGCTTGACCCCCTCCTACGACTTGAGCGCTTTCAAGTTCGACCCCAT
CAAGGAATCCATCGTCTCCCGGGAGATGACCAGGCGCTACATGACTGACATGATCACCTA
CGCCGACACAGACGTCGTTGTCGTCGGTGCTGGCTCCGCCGGGCTATCCTGCGCCTACGA
ACTCAGCAAGAACCCCGACGTTCAGGTGGCCATCATCGAGCAGTCCGTCAGCCCCGGCGG
AGGTGCATGGCTCGGTGGCCAGCTCTTCTCTGCCATGGTTGTGCGCAAACCCGCCCATCT
CTTCCTTAACGAGCTCGGCATTGACTACGATGAGCAAGACAACTACGTTGTCATCAAGCA
CGCCGCCCTATTCACCTCCACCATCATGAGCAAGCTCCTTGCCC |
3' Flanking Sequence | GCCCAACGTGAAGCTCTTCAACGCTGTGGCTGCAGAGGACTTGATCATTAAGGGTGGCAG
AGTTGGTGGCGTGGTCACCAACTGGGCCTTGGTCTCAATGAACCACGACACACAGTCGTG
CATGGACCCCAACGTCATGGAGGCCAAGGTTGTGGTGAGCTCATGTGGTCACGACGGACC
CATGGGAGCCACCGGCGTCAAGAGGTTGAGGAGCGTTGGGATGATTGAGAGCGTGCCCGG
GATGAAGGCCTTGGACATGAACGCAGCTGAGGATGCTATCGTGAAGCTCACAAGGGAAAT
TGTGCCAGGAATGATCGTCACCGGCATGGAAGTTGCTGAGATTGATGGATCCCCAAGAAT
GGGACCTACATTCGGAGCCATGATGATCTCAGGGCAAAAGGCAGCTCACTTGGCATTAAA
GGCACTGGGACTCCCCAACGCTTTGGATGGATCATACGTCGGAGGCATCCAGCCTGAGCT
GATCCTAGCTGCTGCAGAATCCGCTGAGATCGCCGAGGCTTAATTGTTGCGTTATATGTT
AATAAACAAGGAAAAAACCAGTTTCGAGTCGAAAATAATAGCGCGGTTGAGGAGTGAGCG
ATTTTTTATGGTAGCTAAGTGATGGTTATTGTGGATATTGATGTGGTTTGGACCTATGTG
AGTTTTGATAATAATGTGGACGGTATGGATTATGT |
Species | Pyrus pyrifolia |
Publication | [view all] |
Contact | Toshiya Yamamoto
|
Comment | SNP position in sequence: 1005 |
Publications
Year | Publication |
2014 | Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863. |
Sequence
>JPsnpHou00630 ID=JPsnpHou00630; Name=JPsnpHou00630; organism=Pyrus pyrifolia; type=genetic_marker; length=1700bp AGAGAGACATAATCCATCCGTCCACATTATATCAAAACTCACATAGGTCC CAAACCACATCAAATATCCACAATAACCATCACTTAGCTACCNTAAAAAA TCGCTCACTCCTCAACCGCGCTATTATTTTCGACTCGAAACTGGTTTTTC CTTGTTTATTAACATATAACGCAACAATTAAGCCTCGGCGATCTCAGCGG ATTCTGCAGCAGCTAGGATCAGCTCAGGCTGGATGCCTCCGACGTATGAT CCATCCAAAGCGTTGGGGAGTCCCAGTGCCTTTAATGCCAAGTGAGCTGC CTTTTGCCCTGAGATCATCATGGCTCCGAATGTAGGTCCCATTCTTGGGG ATCCATCAATCTCAGCAACTTCCATGCCGGTGACGATCATTCCTGGCACA ATCACCCCATCTTATCATCTTCTCTCTCTCTTTCTCTCGCATCAATCAAT GGCAACCATGGCTTCCACCCTCACCTCCTCCTCCCTCACCGCCAAGCTCC AGAAGTCCTCCCTCCTCGACTCCTCTTTCCATGGCGCTCCCATGGTCCGC CTTCAGCCGGCCAAGGCGGCCCCCGCCAACAACGGCGGCCTCTCCGTCTC CATGTCTGCCAACGGCTTGACCCCCTCCTACGACTTGAGCGCTTTCAAGT TCGACCCCATCAAGGAATCCATCGTCTCCCGGGAGATGACCAGGCGCTAC ATGACTGACATGATCACCTACGCCGACACAGACGTCGTTGTCGTCGGTGC TGGCTCCGCCGGGCTATCCTGCGCCTACGAACTCAGCAAGAACCCCGACG TTCAGGTGGCCATCATCGAGCAGTCCGTCAGCCCCGGCGGAGGTGCATGG CTCGGTGGCCAGCTCTTCTCTGCCATGGTTGTGCGCAAACCCGCCCATCT CTTCCTTAACGAGCTCGGCATTGACTACGATGAGCAAGACAACTACGTTG TCATCAAGCACGCCGCCCTATTCACCTCCACCATCATGAGCAAGCTCCTT GCCCrGCCCAACGTGAAGCTCTTCAACGCTGTGGCTGCAGAGGACTTGAT CATTAAGGGTGGCAGAGTTGGTGGCGTGGTCACCAACTGGGCCTTGGTCT CAATGAACCACGACACACAGTCGTGCATGGACCCCAACGTCATGGAGGCC AAGGTTGTGGTGAGCTCATGTGGTCACGACGGACCCATGGGAGCCACCGG CGTCAAGAGGTTGAGGAGCGTTGGGATGATTGAGAGCGTGCCCGGGATGA AGGCCTTGGACATGAACGCAGCTGAGGATGCTATCGTGAAGCTCACAAGG GAAATTGTGCCAGGAATGATCGTCACCGGCATGGAAGTTGCTGAGATTGA TGGATCCCCAAGAATGGGACCTACATTCGGAGCCATGATGATCTCAGGGC AAAAGGCAGCTCACTTGGCATTAAAGGCACTGGGACTCCCCAACGCTTTG GATGGATCATACGTCGGAGGCATCCAGCCTGAGCTGATCCTAGCTGCTGC AGAATCCGCTGAGATCGCCGAGGCTTAATTGTTGCGTTATATGTTAATAA ACAAGGAAAAAACCAGTTTCGAGTCGAAAATAATAGCGCGGTTGAGGAGT GAGCGATTTTTTATGGTAGCTAAGTGATGGTTATTGTGGATATTGATGTG GTTTGGACCTATGTGAGTTTTGATAATAATGTGGACGGTATGGATTATGT
|