JPsnpHou00535, JPsnpHou00535 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00535
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	ATCAGCAATGAGGTTAAGTTTGCATGGAAAATTCAGAGGGACATGGCGGAGCGTGGACAC AGTCTCGAGAGCATCAAAGCCAGTATTGAAGCCCGAAAGCCTGATTTCGATGCTTATATT GATCCACAAAAGCAGTACGCAGATGCAGTGATAGAAGTGTTGCCAACCCAATTGATTCCA GGTGACAATGAGGGGAAGGTGTTGAGGGTGAGGTTGATTATGAAGGAAGGTGTGAAATAT TTCAACCCAGTCTACTTGTTTGATGAGGGTTCCACCATCTCATGGATTCCCTGTGGAAGG AAGCTCACCTGCTCTTACCCTGGAATCAAATTCAACTATGGCCCTGACACTTACTTCAGC nACGAGGTGTCnTTGTTGGAGATGGATGGGCAATTTGACAGATTAGATGAGCTGATCTAT GTGGAGAGTCATCTAAGCAACATCTCCACCAAGTTCTATGGAGAAGTCACCCAACAAATG TTGAAGCACTCTGATTTCCC
3' Flanking Sequence	GGCAGCAACAACGGAACTGGCCTCTTCCAAACCATCGTCGGATTGAAGATCCGGGACCTC TACGAGCAGCTTATTGCAGCCAGGGCCAAAACTCCAGTAGAAGCAACCAAAGCTTAGAAA TATTnCATCAAATTAATCTCTTTGCCTAATTACATTGTCATGCCTTATCTCTATTGATTG TACCTACTTAATTCAAGTAAGAGACTGCATGCATGCCTATTTTCCACTCTCATCTCTTTC TTTACGTTGTAATTCTATGCATGAATATTTGTATTATACAGATTAAAATTAACAAAATAT AATAGAAAAAAAAAAACGAAGAACTANACAAGACGACACAGGAG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 501

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG6	N/A	35.69	JPsnpHou00535	View

Sequence

>JPsnpHou00535 ID=JPsnpHou00535; Name=JPsnpHou00535; organism=Pyrus pyrifolia; type=genetic_marker; length=845bp
ATCAGCAATGAGGTTAAGTTTGCATGGAAAATTCAGAGGGACATGGCGGA
GCGTGGACACAGTCTCGAGAGCATCAAAGCCAGTATTGAAGCCCGAAAGC
CTGATTTCGATGCTTATATTGATCCACAAAAGCAGTACGCAGATGCAGTG
ATAGAAGTGTTGCCAACCCAATTGATTCCAGGTGACAATGAGGGGAAGGT
GTTGAGGGTGAGGTTGATTATGAAGGAAGGTGTGAAATATTTCAACCCAG
TCTACTTGTTTGATGAGGGTTCCACCATCTCATGGATTCCCTGTGGAAGG
AAGCTCACCTGCTCTTACCCTGGAATCAAATTCAACTATGGCCCTGACAC
TTACTTCAGCnACGAGGTGTCnTTGTTGGAGATGGATGGGCAATTTGACA
GATTAGATGAGCTGATCTATGTGGAGAGTCATCTAAGCAACATCTCCACC
AAGTTCTATGGAGAAGTCACCCAACAAATGTTGAAGCACTCTGATTTCCC
yGGCAGCAACAACGGAACTGGCCTCTTCCAAACCATCGTCGGATTGAAGA
TCCGGGACCTCTACGAGCAGCTTATTGCAGCCAGGGCCAAAACTCCAGTA
GAAGCAACCAAAGCTTAGAAATATTnCATCAAATTAATCTCTTTGCCTAA
TTACATTGTCATGCCTTATCTCTATTGATTGTACCTACTTAATTCAAGTA
AGAGACTGCATGCATGCCTATTTTCCACTCTCATCTCTTTCTTTACGTTG
TAATTCTATGCATGAATATTTGTATTATACAGATTAAAATTAACAAAATA
TAATAGAAAAAAAAAAACGAAGAACTANACAAGACGACACAGGAG