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Marker Overview
Name | JPsnpHou00535 |
dbSNP ID | N/A |
Type | SNP |
SNP Alleles | T/C |
5' Flanking Sequence | ATCAGCAATGAGGTTAAGTTTGCATGGAAAATTCAGAGGGACATGGCGGAGCGTGGACAC
AGTCTCGAGAGCATCAAAGCCAGTATTGAAGCCCGAAAGCCTGATTTCGATGCTTATATT
GATCCACAAAAGCAGTACGCAGATGCAGTGATAGAAGTGTTGCCAACCCAATTGATTCCA
GGTGACAATGAGGGGAAGGTGTTGAGGGTGAGGTTGATTATGAAGGAAGGTGTGAAATAT
TTCAACCCAGTCTACTTGTTTGATGAGGGTTCCACCATCTCATGGATTCCCTGTGGAAGG
AAGCTCACCTGCTCTTACCCTGGAATCAAATTCAACTATGGCCCTGACACTTACTTCAGC
nACGAGGTGTCnTTGTTGGAGATGGATGGGCAATTTGACAGATTAGATGAGCTGATCTAT
GTGGAGAGTCATCTAAGCAACATCTCCACCAAGTTCTATGGAGAAGTCACCCAACAAATG
TTGAAGCACTCTGATTTCCC |
3' Flanking Sequence | GGCAGCAACAACGGAACTGGCCTCTTCCAAACCATCGTCGGATTGAAGATCCGGGACCTC
TACGAGCAGCTTATTGCAGCCAGGGCCAAAACTCCAGTAGAAGCAACCAAAGCTTAGAAA
TATTnCATCAAATTAATCTCTTTGCCTAATTACATTGTCATGCCTTATCTCTATTGATTG
TACCTACTTAATTCAAGTAAGAGACTGCATGCATGCCTATTTTCCACTCTCATCTCTTTC
TTTACGTTGTAATTCTATGCATGAATATTTGTATTATACAGATTAAAATTAACAAAATAT
AATAGAAAAAAAAAAACGAAGAACTANACAAGACGACACAGGAG |
Species | Pyrus pyrifolia |
Publication | [view all] |
Contact | Toshiya Yamamoto
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Comment | SNP position in sequence: 501 |
Publications
Year | Publication |
2014 | Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863. |
Sequence
>JPsnpHou00535 ID=JPsnpHou00535; Name=JPsnpHou00535; organism=Pyrus pyrifolia; type=genetic_marker; length=845bp ATCAGCAATGAGGTTAAGTTTGCATGGAAAATTCAGAGGGACATGGCGGA GCGTGGACACAGTCTCGAGAGCATCAAAGCCAGTATTGAAGCCCGAAAGC CTGATTTCGATGCTTATATTGATCCACAAAAGCAGTACGCAGATGCAGTG ATAGAAGTGTTGCCAACCCAATTGATTCCAGGTGACAATGAGGGGAAGGT GTTGAGGGTGAGGTTGATTATGAAGGAAGGTGTGAAATATTTCAACCCAG TCTACTTGTTTGATGAGGGTTCCACCATCTCATGGATTCCCTGTGGAAGG AAGCTCACCTGCTCTTACCCTGGAATCAAATTCAACTATGGCCCTGACAC TTACTTCAGCnACGAGGTGTCnTTGTTGGAGATGGATGGGCAATTTGACA GATTAGATGAGCTGATCTATGTGGAGAGTCATCTAAGCAACATCTCCACC AAGTTCTATGGAGAAGTCACCCAACAAATGTTGAAGCACTCTGATTTCCC yGGCAGCAACAACGGAACTGGCCTCTTCCAAACCATCGTCGGATTGAAGA TCCGGGACCTCTACGAGCAGCTTATTGCAGCCAGGGCCAAAACTCCAGTA GAAGCAACCAAAGCTTAGAAATATTnCATCAAATTAATCTCTTTGCCTAA TTACATTGTCATGCCTTATCTCTATTGATTGTACCTACTTAATTCAAGTA AGAGACTGCATGCATGCCTATTTTCCACTCTCATCTCTTTCTTTACGTTG TAATTCTATGCATGAATATTTGTATTATACAGATTAAAATTAACAAAATA TAATAGAAAAAAAAAAACGAAGAACTANACAAGACGACACAGGAG
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