JPsnpHou00136, JPsnpHou00136 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00136
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	GTACGAGCGTACAGTAACCATGAATTCCTTGGGAAAAACATTCTCCTTGACTGGGTGGAA GATCGGTTGGGCTATAGCTCCGCCACACCTGTCATGGGGAGTTCGGCAGGCACACTCTTT TCTCACATTTGCTACCTCCACTCCAATGCAATGGGCAGCTGCAACTGCTCTCAGAGCTCC AGACTCCTACTATGTGGAGCTGAAAAGAGATTACCAGGCAAAGAAGGCGATTTTGGTCGA GGGATTGAAATCTGTCGGTTTCAAAGTGTATCCATCAAGCGGTACCTACTTTGTGGTTGT TGATCACACTCCTTTTGGACTGGAAAATGATGTTGCCTTTTGTGAGTAT
3' Flanking Sequence	TGATCAAGGAAGTTGGAGTGGTGGCAATCCCCACCAGTGTATTTTACTTAnACCCGGAAG ATGGAAAGAATCTAGTAAGATTTACCTTCTGCAAAGACGAAGGAACTCTTAGnGCTGCCG TTGACAGGATGAAGGAGAAGTTGAGAAGATAATTCGAATGGTCGGTTAGAATAAATGGAA CTCAAACTTGTAATAAGCATCTGAACGGAAGGGATCTTATTCCTGTGCCCTGCAGTTTGA AGCCATAGTTTTTAGACCTCTGTTAAATAAGATTATTTAGCTTATTAGCTGTGTGGAATT TTATGTTTTTGTTGAAACAAGCAAAAATGAGCAAGACAAGTAATGAACGGCACGGAGCCT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 350

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG15	N/A	188.43	JPsnpHou00136	View

Sequence

>JPsnpHou00136 ID=JPsnpHou00136; Name=JPsnpHou00136; organism=Pyrus pyrifolia; type=genetic_marker; length=710bp
GTACGAGCGTACAGTAACCATGAATTCCTTGGGAAAAACATTCTCCTTGA
CTGGGTGGAAGATCGGTTGGGCTATAGCTCCGCCACACCTGTCATGGGGA
GTTCGGCAGGCACACTCTTTTCTCACATTTGCTACCTCCACTCCAATGCA
ATGGGCAGCTGCAACTGCTCTCAGAGCTCCAGACTCCTACTATGTGGAGC
TGAAAAGAGATTACCAGGCAAAGAAGGCGATTTTGGTCGAGGGATTGAAA
TCTGTCGGTTTCAAAGTGTATCCATCAAGCGGTACCTACTTTGTGGTTGT
TGATCACACTCCTTTTGGACTGGAAAATGATGTTGCCTTTTGTGAGTATy
TGATCAAGGAAGTTGGAGTGGTGGCAATCCCCACCAGTGTATTTTACTTA
nACCCGGAAGATGGAAAGAATCTAGTAAGATTTACCTTCTGCAAAGACGA
AGGAACTCTTAGnGCTGCCGTTGACAGGATGAAGGAGAAGTTGAGAAGAT
AATTCGAATGGTCGGTTAGAATAAATGGAACTCAAACTTGTAATAAGCAT
CTGAACGGAAGGGATCTTATTCCTGTGCCCTGCAGTTTGAAGCCATAGTT
TTTAGACCTCTGTTAAATAAGATTATTTAGCTTATTAGCTGTGTGGAATT
TTATGTTTTTGTTGAAACAAGCAAAAATGAGCAAGACAAGTAATGAACGG
CACGGAGCCT