JPsnpHou00442, JPsnpHou00442 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00442
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/T
5' Flanking Sequence	CCAACAGATGTGGATTTCCAAGGGTGAGTACGACGAGTCAGGTCCATCCATTGTCCACAG GAAGTGCTTCTGAGTTCTCCAAATGGTTTTGATGGTGAGCTATTTTTCAATTTAGTTGGA TTTTTGTGTCGTGTCATGTGAAGTAAGTTTGGTTGGCAACGATGTGTTGAGGTGGGGTCA CTCGAGGACGGGGTAGATTCAGATGTTGACTTCTCATCCACGCGAGAGATTTTGCTTGCA ATGGCAAATGGTTCTATGTATATGTGGTGGGCAGAA
3' Flanking Sequence	ATCAGTCCAAAACCATCCTCGCCTTGCCTAATCnTTGGTTCAACCATCTATTTCGGTAGG ATGTTTGTAGCAGGAGAGTGATTGGGATGCTTTTCTTCGTCTTCCTTTTATTTCACTTTT GTTCTATATTTGACGGTCTTTTTTCATCCGGGAACATTAATATTAATAGTTTTTATTGTA TCTGAAAGTTTATTGTAGCGTCAGTTTGTGGTCGAAAACTGGTATGCAAATTTATATTTA AATACTGGCTTGAAAGCTTGAGAGGAATCTGTTTTTCTCTTGTGTGCTTGCATTTGTTAT TTCTTTGAAGGTTTGTTTTGTTGGTCTTTTTGTTAGTTTGTCAGGGTAATCGTAGGCCTC AAATGTTTTATATGGCATGGCATTTGCCAATTGTATGCGAGGCCTGCCAC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 277

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG1	N/A	41.08	JPsnpHou00442	View

Sequence

>JPsnpHou00442 ID=JPsnpHou00442; Name=JPsnpHou00442; organism=Pyrus pyrifolia; type=genetic_marker; length=687bp
CCAACAGATGTGGATTTCCAAGGGTGAGTACGACGAGTCAGGTCCATCCA
TTGTCCACAGGAAGTGCTTCTGAGTTCTCCAAATGGTTTTGATGGTGAGC
TATTTTTCAATTTAGTTGGATTTTTGTGTCGTGTCATGTGAAGTAAGTTT
GGTTGGCAACGATGTGTTGAGGTGGGGTCACTCGAGGACGGGGTAGATTC
AGATGTTGACTTCTCATCCACGCGAGAGATTTTGCTTGCAATGGCAAATG
GTTCTATGTATATGTGGTGGGCAGAAwATCAGTCCAAAACCATCCTCGCC
TTGCCTAATCnTTGGTTCAACCATCTATTTCGGTAGGATGTTTGTAGCAG
GAGAGTGATTGGGATGCTTTTCTTCGTCTTCCTTTTATTTCACTTTTGTT
CTATATTTGACGGTCTTTTTTCATCCGGGAACATTAATATTAATAGTTTT
TATTGTATCTGAAAGTTTATTGTAGCGTCAGTTTGTGGTCGAAAACTGGT
ATGCAAATTTATATTTAAATACTGGCTTGAAAGCTTGAGAGGAATCTGTT
TTTCTCTTGTGTGCTTGCATTTGTTATTTCTTTGAAGGTTTGTTTTGTTG
GTCTTTTTGTTAGTTTGTCAGGGTAATCGTAGGCCTCAAATGTTTTATAT
GGCATGGCATTTGCCAATTGTATGCGAGGCCTGCCAC