Mdo-HB-15-47a

Haplotype Block Overview

Name	Mdo-HB-15-47a
Species	Malus x domestica
Stock Haplotype	[view all 420]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Cox's Orange Pippin	2 3
Rome Beauty Law	2 3
Jonafree	2 3
Redfree	2
Spartan	2
Wagener	2 3
Worcester Pearmain	2
Tsugaru	2
Golden Delicious	2
Fuji	2 4
Empire	2 4
Gala	2 3
Honeycrisp	2
Elstar	2 3
Marshall McIntosh	2
Cripps Pink	2
Granny Smith	2
Jonathan	2 3
Delicious	2 4
Prima	2
821	2
Fiesta	2 3
Ingrid Marie	2 3
Idared	2 3
Esopus Spitzenburg	2 3
Braeburn	2 4
Sansa	3
Lodi	2
James Grieve	2
Cripps Red	2
Burgundy	2 3
Akane	2 3
Ambrosia	2 4
Aurora Golden Gala	2 4
Beacon	2
Ben Davis	2 3
Chinook	2
Clivia	3
Co-op 17	2 3
Co-op 18	13 7
Dayton	2 3
Delblush	2 3
Delorgue	2
Geheimrat Dr. Oldenburg	2 3
Duchess of Oldenburg	2
Early Cortland	2
Empress	2 3
F2 26829-2-2	2
Fantazja	2 3
Fireside	2 3
Fortune	2
Frostbite	2 3
Ginger Gold	2
GMAL 4327	2
GMAL 4328	2 8
GMAL 4329	2
GMAL 4332	2 8
Goodland	2
Haralson	2 3
Honeygold	2 3
Hudson	2
Jolana	2
Jonamac	2 3
Keepsake	2 3
Kerr	11 2
Lady Williams	2
Liberty	2
Linda	2 3
Longfield	11 2
Macoun	2
Malinda	2
Melrose	3 4
MN 1627	2
MN 1628	2 3
MN 1691	2
MN 1706	2
MN 1708	2 3
MN 1760	2 3
MN 1764	3
MN 1789	2
MN 1802	3
MN 1836	3
MN 1837	2
MN 1839	2
MN 1888	2
MN 1940	3
MN 2016	2
AA-44	2 3
Monroe	3
Montgomery	2
Nicola	3 4
NJ 31	3
NJ 53	2 3
Oriole	2 3
PCF-3-120	2
PRI 14-126	2
PRI 14-510	2
PRI 16-144	2
PRI 1661-2	2 4
PRI 855-102	2
Raritan	13 7
Regent	2
Rubin	2
Russian Seedling	2
Sawa	2 3
Sciros	2 3
Sharon	2
Silken	2
Wildung	2 3
Splendour	2 4
State Fair	3
NJ 55	2
Co-op 29	2
Sunrise	2
Sweet Sixteen	2
Topaz	2 3
Vanda	2 3
Vista Bella	2 3
Wealthy	2 3
Winesap	2 3
Winter Banana	2
Yellow Newtown	4 8
Yellow Transparent	2 7
0407-0001	2
0407-0005	2 4
0407-0006	2 4
0407-0007	2
0407-0008	2
0408-0003	2 4
0408-0004	2 4
0408-0005	2
0408-0007	2
0408-0008	4
0408-0010	2 4
0408-0011	2 4
0408-0014	4
0408-0015	2 4
0409-0022	2 4
0409-0024	2 4
0409-0028	2 4
0409-0030	2
0409-0032	2 4
0409-0035	2 4
0409-0036	2 4
0409-0038	2
0409-0039	2
0409-0040	2
0409-0043	2 4
0409-0045	2 4
0410-0002	2
0410-0003	2
0410-0005	2 4
0410-0006	2 4
0410-0010	2
0410-0011	2 4
0410-0012	2 4
0410-0013	2
0410-0015	2 4
0410-0017	2 4
0410-0018	2
0414-0010	2
0414-0015	2
0414-0017	2
0414-0018	2 4
0414-0019	2
0414-0020	2
0414-0021	2
0415-0001	2
0415-0004	2
0415-0005	2 4
0415-0011	2 4
0415-0012	2
0415-0013	2 4
0415-0014	2 3
0415-0016	2
0415-0017	2 4
0415-0019	2 4
0415-0020	2
0415-0025	2
AE_HCxJonf-145	2
AE_HCXJonf-148	2
AE_HCxJonf-157	2
AE_HCXJonf-162	2
AE_HCXJonf-168	2
AE_HCxJonf-175	2 3
AE_HCxJonf-183	2
AE_HCxJonf-185	2 3
AE0118-237	2
AE0118-238	2
AE0118-239	2
AE0118-240	2
AE0118-243	2
AE0118-244	2
AE0118-245	2
AE0118-246	2
AE0118-249	2
AE0206-159	3 4
AE0206-160	3 4
AE0206-161	3 4
AE0206-162	3 4
AE0206-163	2 3
AE0206-164	2 3
AE0206-165	2
AE0206-167	3 4
AE0206-168	2 3
AE0206-169	3 4
AE0206-170	2 3
AE0210-146	2
AE0210-147	2
AE0210-149	2
AE0210-150	2
AE0210-151	2
AE0210-152	2 3
AE0210-153	2
AE0210-154	2
AE0210-157	2
AE0210-158	2
AE0210-159	2
AE0210-162	2
AE0210-163	2
AE0210-164	2
AE0210-165	2
AE0210-166	2
AE0210-168	2
AE0210-169	2
AE0210-170	2
AE0210-171	2
AE0210-172	2
AE0210-173	2
AE0210-174	2
AE0213-175	2
AE0213-176	2
AE0213-177	2 8
AE0213-178	2
AE0213-179	2
AE0213-180	2 8
AE0213-181	2 8
AE0213-182	2 8
AE0213-183	2
AE0213-186	2 8
AE0213-187	2 8
AE0213-190	2
AE0213-193	2
AE0213-194	2
AE0213-195	2 8
AE0213-196	2 8
AE0213-197	2
AE0213-198	2
AE0213-199	2 8
AE0213-200	2
AE0213-201	2 8
AE0213-202	2 8
AE0213-205	2
AE0213-206	2
AE0251-323	2 4
AE0251-325	2 4
AE0251-327	2
AE0251-329	2
AE0251-330	2 4
AE0251-331	2
AE0251-342	2
AE0251-343	2
AE0406-239	2
AE0406-254	2
AE0406-258	2
AE0406-259	2
AE0406-263	2
AE0406-264	2
AE0406-266	2
AE0406-271	2 3
AE0406-274	2
AE0406-278	2
AE0406-281	2
AE0406-286	2
AE0406-288	2
AE0406-289	2
AE0406-294	2
AE0406-298	2
Minneiska	2 3
NJ 303955	2
PRI 612-1	2 4
Arlet	2
Co-op 39	2 3
Pinova	2 3
Scired	2
Scifresh	2
0409-0025	2 4
0409-0026	2
0409-0027	2
0409-0031	2 4
0409-0033	2
0409-0047	2 4
G-14-050	3
G-14-052	2 3
G-14-054	3 4
G-14-055	3 4
G-14-056	2 4
G-14-057	2 3
G-14-059	3
G-14-060	2 3
G-14-061	3 4
G-14-062	3 4
G-14-064	2 4
G-14-065	2 3
G-14-069	3
G-14-067	3 4
G-14-068	2 3
G-14-071	2 3
G-14-073	2 3
G-14-074	3
G-14-075	2 3
G-14-076	3 4
G-14-077	2 4
G-14-078	3
G-14-080	3 4
G-09-232	2
G-09-233	2 4
G-09-234	2
G-09-235	2
G-09-236	2 4
G-09-237	2 4
G-09-238	2
G-09-239	2
G-09-240	2 4
G-09-241	2
G-09-242	2
G-09-243	2 4
G-09-245	2
G-09-246	2
G-09-258	2 4
G-09-259	2 4
G-09-260	2 4
G-09-261	2 4
G-09-262	2
G-09-263	2
G-09-264	2
G-09-265	2
G-09-266	2
G-09-267	2 4
G-09-268	2 4
0408-0021	2 4
Wijcik McIntosh	2
Beauty of Bath	11 12
Northern Spy	2
Co-op 15	2
WA 2	2 4
WA 5	2
Pitmaston Pineapple	2
0411-0011	2 4
0411-0017	2
0411-0023	2 4
AE0250-086	2
AE0250-087	2
AE0250-089	2
AE0250-090	2 4
AE0250-092	2
AE0250-093	2
AE0250-094	2 4
AE0250-095	2 4
Sonya	3 4
Co-op 38	2 3
AE0250-096	2 3
AE0250-327	2 3
Co-op 30	2 4
AE0211-036	2
G-07-039	2 3
PRI 14-152	2
G-07-041	2 3
BC-8S-27-43	2 4
AE0250-091	2
AE0250-097	2
AE0250-325	2
AE0250-326	2
AE0250-329	2
AE0250-333	2
AE0250-334	2
AE0250-335	2
AE0250-336	2
AE0250-338	2
AE0250-341	2
AE0211-038	2 8
AE0211-043	2 8
AE0211-045	2
AE0211-051	2 8
G-07-010	2 3
G-07-014	2 3
G-07-015	2 3
G-07-019	2 3
G-07-020	2 3
G-07-024	2 3
G-07-032	2 3
G-07-033	2 3
G-07-034	2 3
G-07-035	2 3
G-07-044	2 3
AE0211-053	2 3
AE0211-054	2 3
AE0250-088	2
AE0250-324	2 3
AE0250-328	2 3
AE0250-331	2
AE0250-332	2
AE0250-337	2
AE0250-339	2 3
Minnewashta	2 3
Autumn Crisp	2 3
G-14-066	3 4
Lu1-11-010	2
Lu1-11-013	2
Lu1-11-016	2 4
Lu1-11-017	2 4
Lu1-11-018	2
NJ 90	2 3
Lord Lambourne	2
Antonovka GH	2
Kidds Orange Red	2 3
Malus baccata Hansen #2	2
Malus baccata Jackii	2
Summerred	13 7
William's Pride	2 3

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Mdo-HB-15-47a	Apple-RosBREED-3.9K-2019	15	77.35	77.35

Projects


Project Name
RosBREED_Apple_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15
RosBREEDSNP_SNP_CT_11958223_Lg6_02763_MAF20_MDP0000271072_exon1	B	A	B	A	B	B	A	-	-	B	A	A	-	-
RosBREEDSNP_SNP_CT_29932064_Lg15_RosCOS1232_MAF30_449810_exon2	B	A	A	-	-	B	B	-	-	A	B	A	A	B
RosBREEDSNP_SNP_TC_11971703_Lg6_02763_MAF30_MDP0000491271_exon1	A	B	A	B	A	B	B	A	B	B	A	A	-	-

Alignments

Feature Name	Type	Location	Analysis
Chr15	chromosome	Chr15:31549394..31776739.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation