Mdo-HB-15-38

Haplotype Block Overview

Name	Mdo-HB-15-38
Species	Malus x domestica
Stock Haplotype	[view all 428]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Cox's Orange Pippin	5
Rome Beauty Law	4 5
Jonafree	5
Redfree	5
Spartan	5
Wagener	5
Worcester Pearmain	3 9
Tsugaru	4 5
Golden Delicious	4 5
Fuji	4 5
Empire	10 5
Gala	4 5
Honeycrisp	4 5
Elstar	4 5
Marshall McIntosh	10 5
Cripps Pink	4 9
Granny Smith	5 9
Jonathan	4 5
Ralls Janet	3 4
Delicious	5
Discovery	5 9
Prima	5
821	13
Fiesta	5
Ingrid Marie	4 5
Idared	4 5
Esopus Spitzenburg	5
Braeburn	5 9
Sansa	5
Lodi	9
James Grieve	5
Cripps Red	4
Burgundy	4 9
Akane	5 9
Ambrosia	4 5
Aurora Golden Gala	4 5
Beacon	4 5
Ben Davis	4 5
Cameo	4 5
Chinook	4
Clivia	4 5
Co-op 17	5
Co-op 18	5
Dayton	4 5
Delblush	4
Delcorf	5
Delorgue	5 9
Dolgo	26 27
Geheimrat Dr. Oldenburg	4 5
Duchess of Oldenburg	4 5
Early Cortland	10 5 9
Empress	5
F2 26829-2-2	5
Fantazja	10 5
Fireside	4 5
Fortune	5
Frostbite	4 5
Ginger Gold	4 9
GMAL 4327	12 5
GMAL 4328	11 20
GMAL 4329	5
GMAL 4332	20 23
Goodland	4
Haralson	5 9
Honeygold	4 9
Hudson	10 5
Jersey Black	22 5
Jonamac	5
Keepsake	4
Kerr	27 9
Lady Williams	4 9
Liberty	10 4
Linda	5 9
Longfield	34 37
Macoun	10 5
Malinda	4 9
Mantet	4
Melba	5
MN 1628	4
MN 1691	4 5
MN 1706	4
MN 1708	4 5
MN 1760	4 5
MN 1764	10 5
MN 1789	4 5
MN 1802	4 5
MN 1836	4
MN 1837	5
MN 1839	4 5
MN 1888	4 5
MN 1899	5 9
MN 1940	5 9
MN 2016	4 5
AA-44	4 5
Monroe	4 5
Montgomery	12 9
Nicola	5
NJ 31	5
NJ 53	4 5
Oriole	4 5
PRI 14-126	5
PRI 14-510	5
PRI 16-144	5
PRI 1661-2	10 5
PRI 54-12	4 5
PRI 855-102	5
Primula	5
Raritan	18 33
Regent	10 9
Russian Seedling	34 9
Sawa	5
Sciros	4 5
Sharon	10 5
Silken	4
Wildung	4 5
Splendour	4 5
State Fair	4 9
NJ 55	4 5
Co-op 29	4 5
Sunrise	4 5
Sweet Sixteen	5
Topaz	5 9
Vista Bella	5 9
Wealthy	4 5
Winesap	4 5
Winter Banana	5
Yellow Newtown	5
Yellow Transparent	15 9
0407-0001	5
0407-0005	4 5
0407-0006	4 5
0407-0007	4 5
0407-0008	5
0408-0003	4 5
0408-0004	4 5
0408-0005	4 5
0408-0007	4 5
0408-0008	5
0408-0010	5
0408-0011	5
0408-0014	5
0408-0015	5
0409-0022	4 5
0409-0024	5
0409-0028	4 5
0409-0030	4
0409-0032	5
0409-0035	4 5
0409-0036	5
0409-0038	4
0409-0039	4
0409-0040	4 5
0409-0043	4 5
0409-0045	5
0410-0002	5 9
0410-0003	4 5
0410-0005	5
0410-0006	4 9
0410-0010	4 5
0410-0011	5 9
0410-0012	5 9
0410-0013	4 9
0410-0015	5
0410-0017	5
0410-0018	4 9
0414-0010	4 5
0414-0015	4 5
0414-0017	4 5
0414-0018	5
0414-0019	4 5
0414-0020	4 5
0414-0021	4 5
0415-0001	4 5
0415-0004	5
0415-0005	4 5
0415-0011	5
0415-0012	4 5
0415-0013	4 5
0415-0014	4 5
0415-0016	4 5
0415-0017	5
0415-0019	4 5
0415-0020	5
0415-0025	5
AE_HCxJonf-145	5
AE_HCXJonf-148	5
AE_HCXJonf-162	4 5
AE_HCXJonf-168	4 5
AE_HCxJonf-175	5
AE_HCxJonf-183	5
AE_HCxJonf-185	4 5
AE0118-237	10 4
AE0118-238	4 9
AE0118-239	4
AE0118-240	5 9
AE0118-243	4 9
AE0118-244	10 5
AE0118-245	10 5
AE0118-246	5 9
AE0118-249	10 5
AE0206-159	5 9
AE0206-160	5 9
AE0206-161	5 9
AE0206-162	5
AE0206-163	5 9
AE0206-164	4 9
AE0206-165	5 9
AE0206-167	4 5
AE0206-168	4 9
AE0206-169	5 9
AE0206-170	4 5
AE0210-146	5
AE0210-147	5
AE0210-149	4 5
AE0210-150	5
AE0210-151	4 5
AE0210-152	4 9
AE0210-153	4 5
AE0210-154	4 5
AE0210-157	4 5
AE0210-158	4 5
AE0210-159	4 5
AE0210-162	5
AE0210-163	4 5
AE0210-164	5
AE0210-165	5
AE0210-166	5
AE0210-168	5
AE0210-169	5
AE0210-170	5
AE0210-171	5
AE0210-172	4 5
AE0210-173	4 5
AE0210-174	5
AE0213-175	23 4
AE0213-176	23 9
AE0213-177	20 9
AE0213-178	23 4
AE0213-179	23 9
AE0213-180	20 9
AE0213-181	20 9
AE0213-182	20 4
AE0213-183	23 9
AE0213-186	20 9
AE0213-187	20 9
AE0213-190	23 9
AE0213-193	23 4
AE0213-194	23 4
AE0213-195	20 9
AE0213-196	23 4
AE0213-197	23 9
AE0213-198	4 5
AE0213-199	20 9
AE0213-200	23 4
AE0213-201	20 4
AE0213-202	20 4
AE0213-205	23 9
AE0213-206	23 9
AE0251-323	5
AE0251-327	4 5
AE0251-329	4 5
AE0251-330	5
AE0251-331	4 5
AE0251-342	4 5
AE0251-343	5
AE0406-239	4 5
AE0406-254	4 5
AE0406-258	4 5
AE0406-259	4 5
AE0406-263	4 5
AE0406-264	4 5
AE0406-266	4
AE0406-271	4 9
AE0406-274	4 5
AE0406-278	4 5
AE0406-281	4
AE0406-286	4
AE0406-288	4
AE0406-289	4
AE0406-294	4 5
AE0406-298	4 5
Minneiska	5 9
NJ 303955	5
PRI 612-1	5
Arlet	4 5
Co-op 39	4 5
Pinova	4
Scired	4
Scifresh	4 9
0409-0025	5
0409-0026	4 5
0409-0027	4 5
0409-0031	4 5
0409-0033	4
0409-0047	5
G-14-050	4
G-14-052	4
G-14-054	4 5
G-14-055	4 5
G-14-056	4 5
G-14-057	4
G-14-059	4
G-14-060	4 5
G-14-061	4 5
G-14-062	4 5
G-14-064	4
G-14-065	4
G-14-069	4
G-14-067	4 5
G-14-068	4
G-14-071	4 5
G-14-073	4
G-14-074	4
G-14-075	4 5
G-14-076	4 5
G-14-077	4 5
G-14-078	4 5
G-14-080	4 5
G-09-232	9
G-09-233	5 9
G-09-234	4 9
G-09-235	4 9
G-09-236	4 9
G-09-237	4 5
G-09-238	5 9
G-09-239	9
G-09-240	4 5
G-09-241	4 9
G-09-242	9
G-09-243	4 5
G-09-245	9
G-09-246	4 9
G-09-258	4 5
G-09-259	4 9
G-09-260	4 5
G-09-261	9
G-09-262	9
G-09-263	9
G-09-264	4 9
G-09-265	9
G-09-266	9
G-09-267	4 5
G-09-268	4 5
0408-0021	4 5
Wijcik McIntosh	27 36
Beauty of Bath	29 5
Priam	5
Northern Spy	4 5
Co-op 15	5
MN 1702	4 5
WA 2	4 5
WA 5	4 5
Pitmaston Pineapple	18 5
0411-0011	5
0411-0017	5
0411-0023	5
AE0250-086	4 5
AE0250-087	4 5
AE0250-089	5
AE0250-090	5
AE0250-092	4 5
AE0250-093	4 5
AE0250-094	4 5
AE0250-095	5
Sonya	4 5
Co-op 38	5
AE0250-096	5
AE0250-327	5
Co-op 30	5
Jonagrimes	3 5
AE0211-036	20 9
G-07-039	5
PRI 14-152	4 5
PRI 47-176	5
G-07-041	5
BC-8S-27-43	4 5
AE0250-091	12 5
AE0250-097	12 5
AE0250-325	5
AE0250-326	4 5
AE0250-329	4 5
AE0250-333	12 5
AE0250-334	5
AE0250-335	12 5
AE0250-336	12 4
AE0250-338	12 5
AE0250-341	4 5
AE0211-038	20 4
AE0211-043	20 4
AE0211-045	11 4
AE0211-051	11 9
G-07-010	5 9
G-07-014	5 9
G-07-015	5 9
G-07-019	5
G-07-020	5 9
G-07-024	5 9
G-07-032	5 9
G-07-033	5
G-07-034	5 9
G-07-035	5
G-07-044	5
AE0211-053	9
AE0211-054	4 9
AE0250-088	4 5
AE0250-324	4 9
AE0250-328	5 9
AE0250-331	5
AE0250-332	5 9
AE0250-337	4 5
AE0250-339	4 9
Minnewashta	5 9
Autumn Crisp	4 5
G-14-066	4 5
Lu1-11-010	4
Lu1-11-013	4 5
Lu1-11-016	4 5
Lu1-11-017	4 5
Lu1-11-018	4 5
NJ 90	4 5
Lord Lambourne	5 9
Antonovka GH	15 18
Grimes Golden	3 4
Kidds Orange Red	5
Malus baccata Hansen #2	4 5
Malus baccata Jackii	27
Summerred	5
William's Pride	5

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Mdo-HB-15-38	Apple-RosBREED-3.9K-2019	15	60.89	61.18

Projects


Project Name
RosBREED_Apple_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39
GDsnp02080	B	A	B	A	-	B	A	B	A	A	B	-	A	B	B	-	B	-	B	-	B	A	-	A	A	A	B	B	A	-	A	A	B	B	A	B	B	A
RosBREED_SNP_GA_23598147_Lg5	-	-	B	B	B	B	B	B	A	B	B	B	B	B	B	B	B	-	A	B	-	B	-	-	-	B	A	B	B	B	A	B	B	B	A	A	-	-
RosBREEDSNP_SNP_AG_20380867_Lg15_02080_MAF20_1639356_exon1	-	-	A	A	A	-	-	B	B	B	B	B	A	A	-	-	B	-	B	-	-	B	A	A	A	A	A	A	A	B	A	A	A	B	B	B	-	-
RosBREEDSNP_SNP_CT_20367259_Lg15_02080_MAF10_746443_exon1	B	B	B	B	B	B	B	A	A	A	A	A	B	A	A	B	B	-	A	A	A	B	-	A	B	A	A	A	B	A	A	A	A	B	B	B	-	-
RosBREEDSNP_SNP_TC_20348625_Lg15_02080_MAF10_MDP0000571121_exon1	A	A	A	A	A	A	A	B	A	A	A	A	B	B	-	A	A	A	A	A	B	A	-	A	A	A	A	-	-	B	A	B	A	B	A	A	-	-

Alignments

Feature Name	Type	Location	Analysis
Chr15	chromosome	Chr15:20634304..21135056.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation