Mdo-HB-14-8

Haplotype Block Overview
Name Mdo-HB-14-8
Species Malus x domestica
Stock Haplotype [view all 424]
Haplotype [view all]
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr14chromosomeChr14:5922403..6798611 .Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotationn/a
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 7 8
Rome Beauty Law 7 8
Jonafree 7 8
Redfree 49 50
Spartan 10 7
Wagener 8
Worcester Pearmain 7 8
Tsugaru 4 7
Golden Delicious 4 5
Fuji 5 8
Empire 5 7
Gala 10 4
Honeycrisp 5 7
Elstar 5 7
Marshall McIntosh 7 8
Cripps Pink 4 5
Granny Smith 10 9
Jonathan 4 7
Ralls Janet 11 8
Delicious 10 5
Discovery 7 8
Prima 7
821 4
Fiesta 8
Ingrid Marie 7 8
Idared 7 8
Esopus Spitzenburg 7 8
Braeburn 10 5
Sansa 4 8
Lodi 5 9
James Grieve 7 8
Cripps Red 4 5
Burgundy 8
Akane 4 8
Ambrosia 10 5
Aurora Golden Gala 4
Beacon 49 50
Ben Davis 4 5 8
Cameo 10 4
Chinook 4
Clivia 8
Co-op 17 18 8
Co-op 18 7 8
Dayton 5 7
Delblush 5
Delorgue 5 8
Dolgo 4
Geheimrat Dr. Oldenburg 8
Duchess of Oldenburg 4 5
Early Cortland 8 9
Empress 7
F2 26829-2-2 4 7
Fantazja 4 7
Fireside 5 7
Fortune 5 52
Frostbite 7 8
Ginger Gold 5
GMAL 4327 4 48
GMAL 4328 4 8
GMAL 4329 43 9
GMAL 4332 4 45
Goodland 7 8
Haralson 4
Honeygold 4 5
Hudson 5 8
Jersey Black 3 9
Jonamac 7 8
Keepsake 7 9
Kerr 4
Lady Williams 10 4
Liberty 4 7
Linda 4
Liveland Raspberry 11 8
Longfield 68 69
Macoun 7 9
Malinda 4
Melba 11 8
Melrose 10 4
MN 1628 8 9
MN 1691 7
MN 1706 56 57
MN 1708 5 7
MN 1760 7
MN 1764 4 7
MN 1789 5 7
MN 1802 4 5
MN 1836 4 9
MN 1837 5 7
MN 1839 4 5
MN 1888 5 7
MN 1899 4 7
MN 1940 7
MN 2016 5 7
AA-44 8
Monroe 7 8
Montgomery 5 9
Nicola 4 5
NJ 31 8
NJ 53 5 7
Oriole 5 8
PRI 14-126 4 5
PRI 14-510 4 7
PRI 16-144 7
PRI 1661-2 10 8
PRI 54-12 4
PRI 855-102 7
Primula 11 4
Raritan 45 65
Regent 4 8
Russian Seedling 8 9
Sawa 4
Sciros 4 5
Sharon 7 9
Silken 4 7
Wildung 5 7
Splendour 4 5
State Fair 4 5
NJ 55 5 7
Co-op 29 5 7
Sunrise 4 7
Sweet Sixteen 7 9
Topaz 8
Vista Bella 5 7
Wealthy 4 5
Winesap 5 8
Winter Banana 49 50
Yellow Newtown 65 66
Yellow Transparent 5
0407-0001 4 7
0407-0005 4 7
0407-0006 4 7
0407-0007 4 5
0407-0008 4 7
0408-0003 10 4
0408-0004 4 7
0408-0005 10 4
0408-0007 10 4
0408-0008 4 7
0408-0010 10 4
0408-0011 4 7
0408-0014 4 7
0408-0015 4 7
0409-0022 4 5
0409-0024 4 7
0409-0028 4 7
0409-0030 4 5
0409-0032 4 5
0409-0035 4 5
0409-0036 4 5
0409-0038 4 7
0409-0039 4 7
0409-0040 4 7
0409-0043 4 7
0409-0045 4 7
0410-0002 10 4
0410-0003 10 4
0410-0005 4 9
0410-0006 10 4
0410-0010 10 4
0410-0011 10 4
0410-0012 4 9
0410-0013 4 9
0410-0015 4 9
0410-0017 4 9
0410-0018 4 9
0414-0010 5 7
0414-0015 5
0414-0017 5 7
0414-0018 10 5
0414-0019 7
0414-0020 10 7
0414-0021 7
0415-0004 10 5
0415-0005 5 7
0415-0011 10 7
0415-0012 10 7
0415-0013 7
0415-0014 5 8
0415-0016 10 5
0415-0017 10 7
0415-0019 10 7
0415-0020 10 7
0415-0025 5 7
AE_HCxJonf-145 5 7
AE_HCXJonf-148 5 8
AE_HCxJonf-157 7 8
AE_HCXJonf-162 7
AE_HCXJonf-168 5 8
AE_HCxJonf-175 7
AE_HCxJonf-183 7 8
AE_HCxJonf-185 7
AE0118-237 5 8
AE0118-238 4 7
AE0118-239 4 7
AE0118-240 4 7
AE0118-243 4 5
AE0118-244 4 7
AE0118-245 4 7
AE0118-246 4 7
AE0118-249 7 8
AE0206-159 10 7
AE0206-160 10 7
AE0206-161 10 7
AE0206-162 10 7
AE0206-163 10 5
AE0206-164 10 7
AE0206-165 4 5
AE0206-167 10 5
AE0206-168 10 7
AE0206-169 10 5
AE0206-170 4 7
AE0210-146 43 7
AE0210-147 7 9
AE0210-149 43 7
AE0210-150 4 43
AE0210-151 4 9
AE0210-152 7
AE0210-153 7 9
AE0210-154 43 7
AE0210-157 4 43
AE0210-158 43 7
AE0210-159 43 7
AE0210-162 7 9
AE0210-163 4 9
AE0210-164 7 9
AE0210-165 43 7
AE0210-166 4 43
AE0210-168 43 7
AE0210-169 43 7
AE0210-170 4 43
AE0210-171 43 7
AE0210-172 43 7
AE0210-173 7 9
AE0210-174 43 7
AE0213-175 45 5
AE0213-176 4 5
AE0213-177 4 5
AE0213-178 45 5
AE0213-179 45 5
AE0213-180 45 5
AE0213-181 4 5
AE0213-182 45 5
AE0213-183 45 5
AE0213-186 4 5
AE0213-187 45 5
AE0213-190 4 5
AE0213-193 4 5
AE0213-194 4 5
AE0213-195 45 5
AE0213-196 45 5
AE0213-197 45 5
AE0213-198 46 5
AE0213-199 45 5
AE0213-200 45 5
AE0213-201 45 5
AE0213-202 4 5
AE0213-205 45 5
AE0213-206 45 5
AE0251-323 4 7
AE0251-325 10 9
AE0251-327 4 7
AE0251-329 4 9
AE0251-330 10 9
AE0251-331 10 7
AE0251-342 4 7
AE0251-343 10 9
AE0406-239 7
AE0406-254 5 7
AE0406-258 5 7
AE0406-259 5 7
AE0406-263 4 7
AE0406-264 7
AE0406-266 4 7
AE0406-271 4 7
AE0406-274 5 7
AE0406-278 5 7
AE0406-281 4 5
AE0406-286 5 7
AE0406-288 4 5
AE0406-289 5 7
AE0406-294 4 5
AE0406-298 5 7
Minneiska 5 7
NJ 303955 7
PRI 612-1 10 4
Arlet 5 7
Co-op 39 48 59
Pinova 5 8
Scired 4
Scifresh 10
0409-0025 4 7
0409-0026 4 5
0409-0027 4 7
0409-0031 4 7
0409-0033 4 5
0409-0047 4 7
G-14-050 5
G-14-052 5 8
G-14-054 5 8
G-14-055 5 8
G-14-056 5 8
G-14-057 8
G-14-059 5 8
G-14-061 8
G-14-062 5
G-14-064 5 8
G-14-065 8
G-14-069 5
G-14-067 5 8
G-14-068 5 8
G-14-073 8
G-14-074 8
G-14-075 5
G-14-076 5
G-14-077 5 8
G-14-080 8
G-09-232 10 5
G-09-233 10 5
G-09-234 5
G-09-235 10 5
G-09-236 10 5
G-09-237 5
G-09-238 5
G-09-239 5
G-09-240 10 5
G-09-241 10 5
G-09-242 10 5
G-09-243 5
G-09-245 5
G-09-246 10 5
G-09-258 10 5
G-09-259 5
G-09-260 5
G-09-261 10 5
G-09-262 10 5
G-09-263 5
G-09-264 10 5
G-09-265 10 5
G-09-266 5
G-09-267 10 5
G-09-268 10 5
0408-0021 4 7
Wijcik McIntosh 7 8
Beauty of Bath 8 9
Priam 4
Northern Spy 8 9
Co-op 15 10 7
MN 1702 7
WA 2 10 4
WA 5 10 4
Pitmaston Pineapple 10 8
0411-0011 5 7
0411-0017 10 5
0411-0023 7
AE0250-086 10 9
AE0250-087 4 7
AE0250-089 10 9
AE0250-090 4 7
AE0250-092 4 7
AE0250-093 10 9
AE0250-094 4 7
AE0250-095 10 7
Sonya 10 5
Co-op 38 5 8
AE0250-096 5 7
AE0250-327 7
Co-op 30 10 7
Jonagrimes 3 5
AE0211-036 4 5
G-07-039 25 8
PRI 14-152 5 7
PRI 47-176 4 7
G-07-041 4 5
BC-8S-27-43 10 4
AE0250-091 48 5
AE0250-097 4 7
AE0250-325 48 5
AE0250-326 4 5
AE0250-329 4 5
AE0250-333 48 5
AE0250-334 4 7
AE0250-335 4 7
AE0250-336 48 5
AE0250-338 48 7
AE0250-341 48 5
AE0211-038 4 5
AE0211-043 4 5
AE0211-045 5 8
AE0211-051 4 5
G-07-010 10 8
G-07-014 4 9
G-07-015 10 4
G-07-019 10 8
G-07-024 4 9
G-07-032 8 9
G-07-033 8 9
G-07-034 10 4
G-07-035 8 9
G-07-044 10 8
AE0211-054 5 7
AE0250-088 5 7
AE0250-324 7
AE0250-328 5
AE0250-331 7
AE0250-332 5 7
AE0250-337 7
AE0250-339 5 7
Minnewashta 5 7
Autumn Crisp 5 8
G-14-066 5
Lu1-11-010 5 7
Lu1-11-013 5
Lu1-11-016 5
Lu1-11-017 7 8
Lu1-11-018 5 8
NJ 90 10 7
Lord Lambourne 7 8
Antonovka GH 56 57
Grimes Golden 3 4
Kidds Orange Red 8
Malus baccata Hansen #2 7 8
Malus baccata Jackii 4
Summerred 5
William's Pride 7 8
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-14-8Apple-RosBREED-3.9K-20191414.1115.31
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122232425262728293031323334353637383940414243444546474849505152535455565758596061626364656667686970
RosBREEDSNP_SNP_AG_9112020_Lg14_01650_MAF30_792092_exon1ABAAAABBAABA--BAABAAAA--AAAAAAAAB--ABAB--ABAAAAAA-B--AABAAB-BABABABAB
RosBREEDSNP_SNP_AG_9119037_Lg14_01650_MAF50_MDP0000183819_exon7ABAAABBBAABBBA--ABAABAABB--BABABAAB---BABBBABBBAABBBA-BAAABABBBBABABB
RosBREEDSNP_SNP_CT_6911313_Lg12_02560_MAF30_491663_exon1--BBBBBBA-BBBB--BBABBAAB-BBBBBBBBBBBBBBBBB-BBBBBBBB--ABBABABBBBBBBBBB
RosBREEDSNP_SNP_CT_8303678_Lg14_RosCOS266_MAF50_MDP0000259123_exon9--AB-AAAA-------------AA-AAABBAABBA---A--A-A--AAB-B---BAABAAB-BBABABA
RosBREEDSNP_SNP_CT_9067765_Lg14_01650_MAF40_1663406_exon1BABBBAABBB------BABBABBAABAABABBBBB---ABABBABBBBBAAAB-ABAABBAAABAABBB
RosBREEDSNP_SNP_GT_8280462_Lg14_RosCOS266_MAF20_MDP0000122990_exon1BBBA-BBBBABBBB--ABBBB-BBBBB--A---AB-BB---BBB-AAABBA---BAABBB--BAB----