scaffold_8:21776825

Marker Overview
Namescaffold_8:21776825
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:scaffold_8:21776825
TypeSNP
SNP AllelesT/C
5' Flanking SequenceGTCAGTTTACCATTATCCCCCAAACCTTAAGCTGTTAGAATGCTGGCCACAACTATTTTA TATTCTTAACACTCCCCCTCACATGTGGGCCTCTTTCCACC
3' Flanking SequenceTTAGAATCAGAGTAATTGAACAGAAAATAAGATAATTTGTTTGTTTACCTGTGTACGGTT ATATTTATACTGATTCAAGCTTTCAAACATTAACTTCTATC
SpeciesPrunus avium
Publication[view all]
ContactStijn Vanderzande
Commentweet cherry SNPs identified by Peace et al (2012) that were not used for the original 6K SNP array - intragenic SNPs
Contact
NameDetails
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RosBREED-3.8K-20208N/A69.23scaffold_8:21776825View
2Sweet Cherry-V-F1-6+9K_array8N/A72.12scaffold_8:21776825View
3Sweet Cherry-VxC-F1-6+9K_array8N/A74.62scaffold_8:21776825View
Sequence
>scaffold_8:21776825 ID=scaffold_8:21776825; Name=scaffold_8:21776825; organism=Prunus avium; type=genetic_marker; length=203bp
GTCAGTTTACCATTATCCCCCAAACCTTAAGCTGTTAGAATGCTGGCCAC
AACTATTTTATATTCTTAACACTCCCCCTCACATGTGGGCCTCTTTCCAC
CYTTAGAATCAGAGTAATTGAACAGAAAATAAGATAATTTGTTTGTTTAC
CTGTGTACGGTTATATTTATACTGATTCAAGCTTTCAAACATTAACTTCT
ATC
Alignments
Feature NameTypeLocationAnalysis
Pp08 chromosome Pp08:22521053..22521053. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr8 chromosome PAV_r1.0chr8:20686440..20686440. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)