scaffold_8:21790892

Marker Overview
Namescaffold_8:21790892
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:scaffold_8:21790892
TypeSNP
SNP AllelesT/G
5' Flanking SequenceTATAAGAGGTAGAAAGATTTGTACCACGCTGGATTAGCTGCAGCAAGAACAGCAGTTCTT GCATTCAAAGATGTAGTGATCCCAGCCTTGGCAATGCTGAC
3' Flanking SequenceGTCTGCTGCTCCATAACTTCATGTATGGCTGTACGATCTAATTCATCCATCTTATCAAAT TCATCAATTGCACAAATGCCCATATCCGCTAGCACCTGAAA
SpeciesPrunus avium
Publication[view all]
ContactStijn Vanderzande
Commentweet cherry SNPs identified by Peace et al (2012) that were not used for the original 6K SNP array - intragenic SNPs
Contact
NameDetails
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RosBREED-3.8K-20208N/A69.27scaffold_8:21790892View
2Sweet Cherry-V-F1-6+9K_array8N/A72.12scaffold_8:21790892View
3Sweet Cherry-VxC-F1-6+9K_array8N/A74.62scaffold_8:21790892View
Sequence
>scaffold_8:21790892 ID=scaffold_8:21790892; Name=scaffold_8:21790892; organism=Prunus avium; type=genetic_marker; length=203bp
TATAAGAGGTAGAAAGATTTGTACCACGCTGGATTAGCTGCAGCAAGAAC
AGCAGTTCTTGCATTCAAAGATGTAGTGATCCCAGCCTTGGCAATGCTGA
CKGTCTGCTGCTCCATAACTTCATGTATGGCTGTACGATCTAATTCATCC
ATCTTATCAAATTCATCAATTGCACAAATGCCCATATCCGCTAGCACCTG
AAA
Alignments
Feature NameTypeLocationAnalysis
Pp08 chromosome Pp08:22535120..22535120. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr8 chromosome PAV_r1.0chr8:20696885..20696885. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)