scaffold_1:5973444

Marker Overview

Name

scaffold_1:5973444

dbSNP ID

N/A

SNP Array ID

Cherry 6+9K SNP array:

scaffold_1:5973444

Type

SNP

SNP Alleles

A/C

5' Flanking Sequence

GCGATTTACAAATAAAGCATAAAAAACAATTTTTCCATAGATAATGAAGGGAAAAAAACC CACAACAAAGCGCACACAGGCACACTAATATTAGTTGAGTA

3' Flanking Sequence

CACAGGAGGGGATTCAAATACTACTTAATAATGTTTCTCTGTCCCACATAAATAATTAGG TTCCATTTGTTTACACATTATGCATACAAGCAGTTCAATCA

Species

Prunus avium

Publication

[view all]

Contact

Stijn Vanderzande

Comment

weet cherry SNPs identified by Peace et al (2012) that were not used for the original 6K SNP array - intergenic SNPs

Contact

Name

Details

Stijn Vanderzande

First name:	Stijn
Last name:	Vanderzande
Address:	Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:	Belgium
Email:	stijn.vanderzande@wsu.edu

Libraries


Library Name	Type
Cherry 6+9K SNP array	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Pp01	chromosome	Pp01:6422805..6422805 .	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)	n/a
PAV_r1.0chr1	chromosome	PAV_r1.0chr1:4873522..4873522 .	Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)	n/a

Publications


Year	Publication
2020	Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Sweet Cherry-RosBREED-3.8K-2020	1	N/A	14.31	scaffold_1:5973444	View

Sequence

>scaffold_1:5973444 ID=scaffold_1:5973444; Name=scaffold_1:5973444; organism=Prunus avium; type=genetic_marker; length=203bp
GCGATTTACAAATAAAGCATAAAAAACAATTTTTCCATAGATAATGAAGG
GAAAAAAACCCACAACAAAGCGCACACAGGCACACTAATATTAGTTGAGT
AMCACAGGAGGGGATTCAAATACTACTTAATAATGTTTCTCTGTCCCACA
TAAATAATTAGGTTCCATTTGTTTACACATTATGCATACAAGCAGTTCAA
TCA