scaffold_6:17610006

Marker Overview
Namescaffold_6:17610006
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:scaffold_6:17610006
TypeSNP
SNP AllelesA/C
5' Flanking SequenceAACACTTCAAGTCAATTGCCACACTCATGCAAAGATGTACATTTCCACGGAGTCTAACCA CAGCCCAAAATGGCTTCTCTTAGATAGTAATTCAAACACCC
3' Flanking SequenceATCCATAGTAGACCAGAGCACTCTGCTTAGTGGTGTTCATGCCATGACAAACCAAAAGCA AAATCAGTATTTCCGCCTAGTTACTCCAGATCATATAGGGT
SpeciesPrunus avium
Publication[view all]
ContactStijn Vanderzande
Commentweet cherry SNPs identified by Peace et al (2012) that were not used for the original 6K SNP array - intergenic SNPs
Contact
NameDetails
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RosBREED-3.8K-20206N/A58.47scaffold_6:17610006View
2Sweet Cherry-C-F1-6+9K_array6N/A70.68scaffold_6:17610006View
3Sweet Cherry-VxC-F1-6+9K_array6N/A61.19scaffold_6:17610006View
Sequence
>scaffold_6:17610006 ID=scaffold_6:17610006; Name=scaffold_6:17610006; organism=Prunus avium; type=genetic_marker; length=203bp
AACACTTCAAGTCAATTGCCACACTCATGCAAAGATGTACATTTCCACGG
AGTCTAACCACAGCCCAAAATGGCTTCTCTTAGATAGTAATTCAAACACC
CMATCCATAGTAGACCAGAGCACTCTGCTTAGTGGTGTTCATGCCATGAC
AAACCAAAAGCAAAATCAGTATTTCCGCCTAGTTACTCCAGATCATATAG
GGT
Alignments
Feature NameTypeLocationAnalysis
Pp06 chromosome Pp06:19476076..19476076. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr6 chromosome PAV_r1.0chr6:13535342..13535342. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)