MDP0000296577, MDP0000296577 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000296577
Unique NameMDP0000296577
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length1881
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000296577_exon_1MDP0000296577_exon_1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000296577MDP0000296577Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 85..112
score: 0.0015coord: 156..181
score: 0.
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 213..262
score: 6.2e-10coord: 318..365
score: 8.4
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 184..210
score: 0.069coord: 390..416
score:
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756PPR: pentatricopeptide repeat domaincoord: 85..116
score: 0.00058coord: 156..183
score: 0.00045coord: 185..215
score: 0.0022coord: 215..245
score: 4.1e-06coord: 320..353
score: 7.4e-08coord: 355..382
score: 0.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 15..49
score: 5.897coord: 81..115
score: 9.065coord: 213..247
score: 11.115coord: 182..212
score: 9.043coord: 151..181
score: 7.640coord: 116..150
score: 5.119coord: 318..352
score: 12.068coord: 285..315
score: 6.500coord: 250..284
score: 5.283coord: 353..383
score: 8.111coord: 389..423
score: 6.939coord: 455..489
score: 6
IPR011990Tetratricopeptide-like helicalGENE3D1.25.40.10no descriptioncoord: 392..474
score: 1.6
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 19.
NoneNo IPR availablePFAMPF14432DYW_deaminasecoord: 493..616
score: 1.5
NoneNo IPR availableSUPERFAMILY48452TPR-likecoord: 285..470
score: 0.00046coord: 151..252
score: 0
NoneNo IPR availableSEGsegsegcoord: 5..22
score
NoneNo IPR availableSEGsegsegcoord: 47..61
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000296577 ID=MDP0000296577; Name=MDP0000296577; organism=Malus x domestica; type=mRNA; length=1881bp
ATGCGCACYCTCCTAAAACCACTTCTGGCACAAGATCCACGCTTCGTTTC
ATTCTATGCACCAATTTTTCAGTCCTTGACTGGCAAGAACTTGCTGAAAC
TAGGCCAACAAGTCCACGCCCAGATGGCCCTACGCGGGTTCGAACCCGAT
GCATATCTCGGCGCCAAGATGGTCGCAATGTATGCAAGCTCAGATGATCT
CGACTCAGCTGTCGCTATCTTCCACAGAGTAAACAACCCATCAACGCTTC
TGTATAATTCGATCATTCGGGCGTATACGCTACATGGGTTCTCTGAGGAA
ACCATGGAAATCTATGGCAGAATGCATTGTTTAGGGCTTAAAGSAGACAA
CTTTACGTACCCTTTTGTTCTCAAGTGTTGTGCGGAACTGTCGAGGATTT
GGATTGGAAAATGTGTTCATGGGTTGAGTTTGAAAGTTGGGTTGGAATCT
GATATGTATGTTGGGACTTCTTTGATCAACATGTATGTGAAATGCTGTGA
TATGAGCGATGCACGTAGGCTGTTCGATAAAATGACTGTGAGAGATGTTT
CRTCTTGGAATGCGTTGATTGCCGGGTACATGAAAGATGGRGAGATTTGT
CTTGCTGAGGATTTGTTTGGGAAAATGCCGGGCAGAAATATTGTTTCTTG
GACGGCTATGATATCGGGGTACACTCAAAATGGGCTTGCGGAGCAAGCAT
TGTTTTTGTTTGATGAGATGTTGAAGAAAGATTCTAAGGTTAAGCCGAAC
TGGGTGACGATAATGAGTGTTCTTCCTGCATGTGCACATTCAGCTGCCCT
CGAGCGAGGGAGAAAAATTCACAACTTTGCGAGCAGGATTGGTTTAGAGT
CTAATGTTTCCATACAGACAGCACTCCTCGCAATGTATGCTAAATGTGGG
AGCCTCTTGGATGCTCGTCAGTGTTTCGAAAGAGTACGTSGAACTCAAAA
TAATTTAGTTGCATGGAATACAATGATAACAGCTTATGCCTCACATGGAC
GCGGATCAGAAGCTGTTTCCACCTTTGAGGACATGATTGTGGCCGGRGTT
CAACCTGATAACATTACATTCACAGGGTTGTTATCAGGATGCAGCCATTC
AGGGCTCGTYGATGTTGGCCTAAAATACTTCGATTACATGAAAAGAGTAT
ACTCTGTCGAACCAGGGGTTGAACATTATGCTTGTGTTGTTGATCTTCTG
GGTCGTGCAGGGCGCTTGGCAGAAGCTAAAGATCTTATAARTAAAATGCC
AATGCAAGCAGGGCCAAGCATTTGGGGTGCAATGTTATCGGCTTGTCGGA
AACACCATAACTTGGAAATTGCCGAAATTGCAGCAAGAAGTCTATTCATC
TTAGAACCAGAAAATAGTGGCAATTATGTCATGCTGTCAAACATATATGC
TGAAGCCGGCATGTGGAAGGAAGTGGACAATTTGAGAGTTCTTTTGAAAG
CTCAAGGCGTGAAGAAGAACCCTGGATGCAGTTGGACAGAGGTCAATGGG
AAAGCTCACTTGTTTCTTGGTGGAGATACATCTCACCCTCAAGCAAAAGA
AATTTACGAGTTCTTGCTGGACGAGTTACCGAAGAAAATTAAGGCAGCCG
GTTATGTACCTGACACTAGCTTTGTTTTGCACGATGTTAGTGAAGAGGAG
AAAGAACATAGCCTGACAACCCACAGTGAAAAGCTTGCCATTGCCTTTGG
ACTTCTTAATACTAGTCCTGGAGTAGTTCTTCGAGTGACCAAGAACCTTC
GAATCTGTGGAGATTGCCACACGGCCACCAAGCTAATATCGAGAATCTAC
GAACGGGAGATAATTGTAAGAGACTTGAATCGCTTCCATCATTTTAAAGA
TGGGAACTGTTCCTGTGGAGATTATTGGTGA
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protein sequence of MDP0000296577

>MDP0000296577 ID=MDP0000296577; Name=MDP0000296577; organism=Malus x domestica; type=polypeptide; length=626bp
MRTLLKPLLAQDPRFVSFYAPIFQSLTGKNLLKLGQQVHAQMALRGFEPD
AYLGAKMVAMYASSDDLDSAVAIFHRVNNPSTLLYNSIIRAYTLHGFSEE
TMEIYGRMHCLGLKXDNFTYPFVLKCCAELSRIWIGKCVHGLSLKVGLES
DMYVGTSLINMYVKCCDMSDARRLFDKMTVRDVSSWNALIAGYMKDGEIC
LAEDLFGKMPGRNIVSWTAMISGYTQNGLAEQALFLFDEMLKKDSKVKPN
WVTIMSVLPACAHSAALERGRKIHNFASRIGLESNVSIQTALLAMYAKCG
SLLDARQCFERVRXTQNNLVAWNTMITAYASHGRGSEAVSTFEDMIVAGV
QPDNITFTGLLSGCSHSGLVDVGLKYFDYMKRVYSVEPGVEHYACVVDLL
GRAGRLAEAKDLIXKMPMQAGPSIWGAMLSACRKHHNLEIAEIAARSLFI
LEPENSGNYVMLSNIYAEAGMWKEVDNLRVLLKAQGVKKNPGCSWTEVNG
KAHLFLGGDTSHPQAKEIYEFLLDELPKKIKAAGYVPDTSFVLHDVSEEE
KEHSLTTHSEKLAIAFGLLNTSPGVVLRVTKNLRICGDCHTATKLISRIY
EREIIVRDLNRFHHFKDGNCSCGDYW
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mRNA from alignment at chr9:5522089..5523969-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000296577 ID=MDP0000296577; Name=MDP0000296577; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr9:5522089..5523969- (Malus x domestica
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mRNA from alignment at MDC012817.639:1103..2983-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000296577 ID=MDP0000296577; Name=MDP0000296577; organism=Malus x domestica; type=mRNA; length=1881bp; location=Sequence derived from: MDC012817.639:1103..2983- (Malus x domestica
ATGCGCACYCTCCTAAAACCACTTCTGGCACAAGATCCACGCTTCGTTTC
ATTCTATGCACCAATTTTTCAGTCCTTGACTGGCAAGAACTTGCTGAAAC
TAGGCCAACAAGTCCACGCCCAGATGGCCCTACGCGGGTTCGAACCCGAT
GCATATCTCGGCGCCAAGATGGTCGCAATGTATGCAAGCTCAGATGATCT
CGACTCAGCTGTCGCTATCTTCCACAGAGTAAACAACCCATCAACGCTTC
TGTATAATTCGATCATTCGGGCGTATACGCTACATGGGTTCTCTGAGGAA
ACCATGGAAATCTATGGCAGAATGCATTGTTTAGGGCTTAAAGSAGACAA
CTTTACGTACCCTTTTGTTCTCAAGTGTTGTGCGGAACTGTCGAGGATTT
GGATTGGAAAATGTGTTCATGGGTTGAGTTTGAAAGTTGGGTTGGAATCT
GATATGTATGTTGGGACTTCTTTGATCAACATGTATGTGAAATGCTGTGA
TATGAGCGATGCACGTAGGCTGTTCGATAAAATGACTGTGAGAGATGTTT
CRTCTTGGAATGCGTTGATTGCCGGGTACATGAAAGATGGRGAGATTTGT
CTTGCTGAGGATTTGTTTGGGAAAATGCCGGGCAGAAATATTGTTTCTTG
GACGGCTATGATATCGGGGTACACTCAAAATGGGCTTGCGGAGCAAGCAT
TGTTTTTGTTTGATGAGATGTTGAAGAAAGATTCTAAGGTTAAGCCGAAC
TGGGTGACGATAATGAGTGTTCTTCCTGCATGTGCACATTCAGCTGCCCT
CGAGCGAGGGAGAAAAATTCACAACTTTGCGAGCAGGATTGGTTTAGAGT
CTAATGTTTCCATACAGACAGCACTCCTCGCAATGTATGCTAAATGTGGG
AGCCTCTTGGATGCTCGTCAGTGTTTCGAAAGAGTACGTSGAACTCAAAA
TAATTTAGTTGCATGGAATACAATGATAACAGCTTATGCCTCACATGGAC
GCGGATCAGAAGCTGTTTCCACCTTTGAGGACATGATTGTGGCCGGRGTT
CAACCTGATAACATTACATTCACAGGGTTGTTATCAGGATGCAGCCATTC
AGGGCTCGTYGATGTTGGCCTAAAATACTTCGATTACATGAAAAGAGTAT
ACTCTGTCGAACCAGGGGTTGAACATTATGCTTGTGTTGTTGATCTTCTG
GGTCGTGCAGGGCGCTTGGCAGAAGCTAAAGATCTTATAARTAAAATGCC
AATGCAAGCAGGGCCAAGCATTTGGGGTGCAATGTTATCGGCTTGTCGGA
AACACCATAACTTGGAAATTGCCGAAATTGCAGCAAGAAGTCTATTCATC
TTAGAACCAGAAAATAGTGGCAATTATGTCATGCTGTCAAACATATATGC
TGAAGCCGGCATGTGGAAGGAAGTGGACAATTTGAGAGTTCTTTTGAAAG
CTCAAGGCGTGAAGAAGAACCCTGGATGCAGTTGGACAGAGGTCAATGGG
AAAGCTCACTTGTTTCTTGGTGGAGATACATCTCACCCTCAAGCAAAAGA
AATTTACGAGTTCTTGCTGGACGAGTTACCGAAGAAAATTAAGGCAGCCG
GTTATGTACCTGACACTAGCTTTGTTTTGCACGATGTTAGTGAAGAGGAG
AAAGAACATAGCCTGACAACCCACAGTGAAAAGCTTGCCATTGCCTTTGG
ACTTCTTAATACTAGTCCTGGAGTAGTTCTTCGAGTGACCAAGAACCTTC
GAATCTGTGGAGATTGCCACACGGCCACCAAGCTAATATCGAGAATCTAC
GAACGGGAGATAATTGTAAGAGACTTGAATCGCTTCCATCATTTTAAAGA
TGGGAACTGTTCCTGTGGAGATTATTGGTGA
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Coding sequence (CDS) from alignment at MDC012817.639:1103..2983-

>MDP0000296577 ID=MDP0000296577; Name=MDP0000296577; organism=Malus x domestica; type=CDS; length=1881bp; location=Sequence derived from: MDC012817.639:1103..2983- (Malus x domestica
ATGCGCACYCTCCTAAAACCACTTCTGGCACAAGATCCACGCTTCGTTTC
ATTCTATGCACCAATTTTTCAGTCCTTGACTGGCAAGAACTTGCTGAAAC
TAGGCCAACAAGTCCACGCCCAGATGGCCCTACGCGGGTTCGAACCCGAT
GCATATCTCGGCGCCAAGATGGTCGCAATGTATGCAAGCTCAGATGATCT
CGACTCAGCTGTCGCTATCTTCCACAGAGTAAACAACCCATCAACGCTTC
TGTATAATTCGATCATTCGGGCGTATACGCTACATGGGTTCTCTGAGGAA
ACCATGGAAATCTATGGCAGAATGCATTGTTTAGGGCTTAAAGSAGACAA
CTTTACGTACCCTTTTGTTCTCAAGTGTTGTGCGGAACTGTCGAGGATTT
GGATTGGAAAATGTGTTCATGGGTTGAGTTTGAAAGTTGGGTTGGAATCT
GATATGTATGTTGGGACTTCTTTGATCAACATGTATGTGAAATGCTGTGA
TATGAGCGATGCACGTAGGCTGTTCGATAAAATGACTGTGAGAGATGTTT
CRTCTTGGAATGCGTTGATTGCCGGGTACATGAAAGATGGRGAGATTTGT
CTTGCTGAGGATTTGTTTGGGAAAATGCCGGGCAGAAATATTGTTTCTTG
GACGGCTATGATATCGGGGTACACTCAAAATGGGCTTGCGGAGCAAGCAT
TGTTTTTGTTTGATGAGATGTTGAAGAAAGATTCTAAGGTTAAGCCGAAC
TGGGTGACGATAATGAGTGTTCTTCCTGCATGTGCACATTCAGCTGCCCT
CGAGCGAGGGAGAAAAATTCACAACTTTGCGAGCAGGATTGGTTTAGAGT
CTAATGTTTCCATACAGACAGCACTCCTCGCAATGTATGCTAAATGTGGG
AGCCTCTTGGATGCTCGTCAGTGTTTCGAAAGAGTACGTSGAACTCAAAA
TAATTTAGTTGCATGGAATACAATGATAACAGCTTATGCCTCACATGGAC
GCGGATCAGAAGCTGTTTCCACCTTTGAGGACATGATTGTGGCCGGRGTT
CAACCTGATAACATTACATTCACAGGGTTGTTATCAGGATGCAGCCATTC
AGGGCTCGTYGATGTTGGCCTAAAATACTTCGATTACATGAAAAGAGTAT
ACTCTGTCGAACCAGGGGTTGAACATTATGCTTGTGTTGTTGATCTTCTG
GGTCGTGCAGGGCGCTTGGCAGAAGCTAAAGATCTTATAARTAAAATGCC
AATGCAAGCAGGGCCAAGCATTTGGGGTGCAATGTTATCGGCTTGTCGGA
AACACCATAACTTGGAAATTGCCGAAATTGCAGCAAGAAGTCTATTCATC
TTAGAACCAGAAAATAGTGGCAATTATGTCATGCTGTCAAACATATATGC
TGAAGCCGGCATGTGGAAGGAAGTGGACAATTTGAGAGTTCTTTTGAAAG
CTCAAGGCGTGAAGAAGAACCCTGGATGCAGTTGGACAGAGGTCAATGGG
AAAGCTCACTTGTTTCTTGGTGGAGATACATCTCACCCTCAAGCAAAAGA
AATTTACGAGTTCTTGCTGGACGAGTTACCGAAGAAAATTAAGGCAGCCG
GTTATGTACCTGACACTAGCTTTGTTTTGCACGATGTTAGTGAAGAGGAG
AAAGAACATAGCCTGACAACCCACAGTGAAAAGCTTGCCATTGCCTTTGG
ACTTCTTAATACTAGTCCTGGAGTAGTTCTTCGAGTGACCAAGAACCTTC
GAATCTGTGGAGATTGCCACACGGCCACCAAGCTAATATCGAGAATCTAC
GAACGGGAGATAATTGTAAGAGACTTGAATCGCTTCCATCATTTTAAAGA
TGGGAACTGTTCCTGTGGAGATTATTGGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_rpt
IPR011990TPR-like_helical_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding