MDP0000303543, MDP0000303543 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000303543
Unique Name	MDP0000303543
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	1296

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr5	chromosome	chr5:3018144..3019439 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC017440.359	contig	MDC017440.359:12369..13664 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000303543_exon_1	MDP0000303543_exon_1	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000303543	MDP0000303543	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004158	Protein of unknown function DUF247, plant	PFAM	PF03140	DUF247	coord: 38..417 score: 2.2e
None	No IPR available	SEG	seg	seg	coord: 408..419 score
None	No IPR available	SEG	seg	seg	coord: 22..31 score
None	No IPR available	SEG	seg	seg	coord: 57..70 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:3018144..3019439+
mRNA from alignment at MDC017440.359:12369..13664+
coding sequence from alignment at MDC017440.359:12369..13664+

mRNA sequence

>MDP0000303543 ID=MDP0000303543; Name=MDP0000303543; organism=Malus x domestica; type=mRNA; length=1296bp
ATGGAAGGAACCAGCGAAGCTCCAGATGACATCGAAAGCCCTTACACTCC
GTTACTAACTTCAATGAGTAAGGAGTTGCATGGTTTGCTTCCCTTGTCCA
ATTCGTGTTGTATCTACAGAGTTCCTGAAGAACTACGGCGTGTAAATGAA
AAGGCCTACACACCTCAAGTAGTCTCTATAGGTCCGCTTCACCATGGCAA
GGAAGGCTTAGAAGACATGGAAGAACACAAGAAGAGGTACCTGAAGTATT
TTTTAGATCGGACTGGGGTCAGCTTGGCAGGTTGTGTACAGAAAATAAAG
GACAAGGAAGCGGAACTGCGCGGTTGCTATGCGCACACCATTGGGTTGTG
CAGTGATGAATTTGTAAGAATCATTCTTGTGGATGCCGTGTTCATCATTG
AGCTCTTATTGAGGTACGAGGGGTATGTCGTGCGCGATAGCAATGACCGC
ATCTTTAACAAACCATGGTTGTTAAAGTTTATAGTACCTGACATGCTTTT
GCTCGAAAATCAGCTCCCGTTATTCATTCTTGAGGATCTCTTTGCCACTG
CAGAGGTGCCGGCGTCGGTGCCTTCAGTACTTGACCTCTTTTATGAGTTC
TGTAAGGAATCAACGAATTTCTATATGGAAAAAGGCAATTGGGAACGTCC
TAGTTTTAAAGTAGAGCATTTTGTTGATTTGGTTAGAACTTTACATCTAC
CAACACCGGAAGAGAACTTAAAAAATGGAGAGTCAGTCGAAACTCTAGCT
GTACCCAGCATGACGAAACTACGCCAGGCTGGAGTCAAGTTTAAGGCGAG
ATCAGGCAAGAATCTATTTGATATATGTTTCAAAGACGGAATTTTGGAAA
TTCCAAAGCTATATATATACGATAACACGGAGCTTGTACTCCGAAACCTT
ATTGCCTTTGAGCAATGCCATTGCACTCGGAATACCTTCTACTTCAGTGA
TTATATCATCCTCATGGATAATTTGGTGAACACCCCAAATGATGTGGAAT
TGCTTGTCAAGAATGGAATTGTTGAACATCTGCTTGGTGACAACAATGAG
GTGTCTACTCTGATTAACAGCCTTGGCAAAGGTCTTTTTGTGTTCAGAGA
CGAATTCTATTATGCTACTCTCTTAAAGGAGCTCAACATCTACTACGAAA
AGCCGTGGAACAAATGGAAGGCAGATCTGAAACAAAAATATTTCAACTCA
CCTTGGACAACTATTTCTGTAATTGCTGCTACTTTTATCATCATACTCAC
TCTCATACAGACGGTGTGTTCTTTTTCCCAATGCGCTCAACGTTAA

protein sequence of MDP0000303543

>MDP0000303543 ID=MDP0000303543; Name=MDP0000303543; organism=Malus x domestica; type=polypeptide; length=431bp
MEGTSEAPDDIESPYTPLLTSMSKELHGLLPLSNSCCIYRVPEELRRVNE
KAYTPQVVSIGPLHHGKEGLEDMEEHKKRYLKYFLDRTGVSLAGCVQKIK
DKEAELRGCYAHTIGLCSDEFVRIILVDAVFIIELLLRYEGYVVRDSNDR
IFNKPWLLKFIVPDMLLLENQLPLFILEDLFATAEVPASVPSVLDLFYEF
CKESTNFYMEKGNWERPSFKVEHFVDLVRTLHLPTPEENLKNGESVETLA
VPSMTKLRQAGVKFKARSGKNLFDICFKDGILEIPKLYIYDNTELVLRNL
IAFEQCHCTRNTFYFSDYIILMDNLVNTPNDVELLVKNGIVEHLLGDNNE
VSTLINSLGKGLFVFRDEFYYATLLKELNIYYEKPWNKWKADLKQKYFNS
PWTTISVIAATFIIILTLIQTVCSFSQCAQR

mRNA from alignment at chr5:3018144..3019439+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000303543 ID=MDP0000303543; Name=MDP0000303543; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr5:3018144..3019439+ (Malus x domestica

mRNA from alignment at MDC017440.359:12369..13664+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000303543 ID=MDP0000303543; Name=MDP0000303543; organism=Malus x domestica; type=mRNA; length=1296bp; location=Sequence derived from: MDC017440.359:12369..13664+ (Malus x domestica
ATGGAAGGAACCAGCGAAGCTCCAGATGACATCGAAAGCCCTTACACTCC
GTTACTAACTTCAATGAGTAAGGAGTTGCATGGTTTGCTTCCCTTGTCCA
ATTCGTGTTGTATCTACAGAGTTCCTGAAGAACTACGGCGTGTAAATGAA
AAGGCCTACACACCTCAAGTAGTCTCTATAGGTCCGCTTCACCATGGCAA
GGAAGGCTTAGAAGACATGGAAGAACACAAGAAGAGGTACCTGAAGTATT
TTTTAGATCGGACTGGGGTCAGCTTGGCAGGTTGTGTACAGAAAATAAAG
GACAAGGAAGCGGAACTGCGCGGTTGCTATGCGCACACCATTGGGTTGTG
CAGTGATGAATTTGTAAGAATCATTCTTGTGGATGCCGTGTTCATCATTG
AGCTCTTATTGAGGTACGAGGGGTATGTCGTGCGCGATAGCAATGACCGC
ATCTTTAACAAACCATGGTTGTTAAAGTTTATAGTACCTGACATGCTTTT
GCTCGAAAATCAGCTCCCGTTATTCATTCTTGAGGATCTCTTTGCCACTG
CAGAGGTGCCGGCGTCGGTGCCTTCAGTACTTGACCTCTTTTATGAGTTC
TGTAAGGAATCAACGAATTTCTATATGGAAAAAGGCAATTGGGAACGTCC
TAGTTTTAAAGTAGAGCATTTTGTTGATTTGGTTAGAACTTTACATCTAC
CAACACCGGAAGAGAACTTAAAAAATGGAGAGTCAGTCGAAACTCTAGCT
GTACCCAGCATGACGAAACTACGCCAGGCTGGAGTCAAGTTTAAGGCGAG
ATCAGGCAAGAATCTATTTGATATATGTTTCAAAGACGGAATTTTGGAAA
TTCCAAAGCTATATATATACGATAACACGGAGCTTGTACTCCGAAACCTT
ATTGCCTTTGAGCAATGCCATTGCACTCGGAATACCTTCTACTTCAGTGA
TTATATCATCCTCATGGATAATTTGGTGAACACCCCAAATGATGTGGAAT
TGCTTGTCAAGAATGGAATTGTTGAACATCTGCTTGGTGACAACAATGAG
GTGTCTACTCTGATTAACAGCCTTGGCAAAGGTCTTTTTGTGTTCAGAGA
CGAATTCTATTATGCTACTCTCTTAAAGGAGCTCAACATCTACTACGAAA
AGCCGTGGAACAAATGGAAGGCAGATCTGAAACAAAAATATTTCAACTCA
CCTTGGACAACTATTTCTGTAATTGCTGCTACTTTTATCATCATACTCAC
TCTCATACAGACGGTGTGTTCTTTTTCCCAATGCGCTCAACGTTAA

Coding sequence (CDS) from alignment at MDC017440.359:12369..13664+

>MDP0000303543 ID=MDP0000303543; Name=MDP0000303543; organism=Malus x domestica; type=CDS; length=1296bp; location=Sequence derived from: MDC017440.359:12369..13664+ (Malus x domestica
ATGGAAGGAACCAGCGAAGCTCCAGATGACATCGAAAGCCCTTACACTCC
GTTACTAACTTCAATGAGTAAGGAGTTGCATGGTTTGCTTCCCTTGTCCA
ATTCGTGTTGTATCTACAGAGTTCCTGAAGAACTACGGCGTGTAAATGAA
AAGGCCTACACACCTCAAGTAGTCTCTATAGGTCCGCTTCACCATGGCAA
GGAAGGCTTAGAAGACATGGAAGAACACAAGAAGAGGTACCTGAAGTATT
TTTTAGATCGGACTGGGGTCAGCTTGGCAGGTTGTGTACAGAAAATAAAG
GACAAGGAAGCGGAACTGCGCGGTTGCTATGCGCACACCATTGGGTTGTG
CAGTGATGAATTTGTAAGAATCATTCTTGTGGATGCCGTGTTCATCATTG
AGCTCTTATTGAGGTACGAGGGGTATGTCGTGCGCGATAGCAATGACCGC
ATCTTTAACAAACCATGGTTGTTAAAGTTTATAGTACCTGACATGCTTTT
GCTCGAAAATCAGCTCCCGTTATTCATTCTTGAGGATCTCTTTGCCACTG
CAGAGGTGCCGGCGTCGGTGCCTTCAGTACTTGACCTCTTTTATGAGTTC
TGTAAGGAATCAACGAATTTCTATATGGAAAAAGGCAATTGGGAACGTCC
TAGTTTTAAAGTAGAGCATTTTGTTGATTTGGTTAGAACTTTACATCTAC
CAACACCGGAAGAGAACTTAAAAAATGGAGAGTCAGTCGAAACTCTAGCT
GTACCCAGCATGACGAAACTACGCCAGGCTGGAGTCAAGTTTAAGGCGAG
ATCAGGCAAGAATCTATTTGATATATGTTTCAAAGACGGAATTTTGGAAA
TTCCAAAGCTATATATATACGATAACACGGAGCTTGTACTCCGAAACCTT
ATTGCCTTTGAGCAATGCCATTGCACTCGGAATACCTTCTACTTCAGTGA
TTATATCATCCTCATGGATAATTTGGTGAACACCCCAAATGATGTGGAAT
TGCTTGTCAAGAATGGAATTGTTGAACATCTGCTTGGTGACAACAATGAG
GTGTCTACTCTGATTAACAGCCTTGGCAAAGGTCTTTTTGTGTTCAGAGA
CGAATTCTATTATGCTACTCTCTTAAAGGAGCTCAACATCTACTACGAAA
AGCCGTGGAACAAATGGAAGGCAGATCTGAAACAAAAATATTTCAACTCA
CCTTGGACAACTATTTCTGTAATTGCTGCTACTTTTATCATCATACTCAC
TCTCATACAGACGGTGTGTTCTTTTTCCCAATGCGCTCAACGTTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004158	DUF247_pln