The pangenome graph constructed from the Strawberry Pangenome Project 2021 (Qin et al. 2021) is available to view via the UCSC Genome Browser through GDR. Below are links where you can access the pangenome data either by the reconstructed putative ancestral genome or by the species as a reference. You can navigate to different chromosomes within the region by typing coordinates into the navigation bar at the top of the Genome Browser. Link to the genome page and JBrowse in GDR is also provided. The pangenome data are provided by Patrick Edger.
| Access UCSC Genome Browser | Access Genome Page in GDR | Access JBrowse in GDR | |
|---|---|---|---|
| Reconstructed Ancestral Genome* | Ancestral 0 | ||
| Ancestral 1 | |||
| Ancestral 2 | |||
| Ancestral 3 | |||
| Ancestral 4 | |||
| Fragaria species | F. daltoniana | F. daltoniana | F. daltoniana |
| F. iinumae | F. iinumae | F. iinumae | |
| F. mandschurica | F. mandschurica | F. mandschurica | |
| F. nilgerrensis | F. nilgerrensis | F. nilgerrensis | |
| F. vesca | F. vesca | F. vesca | |
| F. viridis | F. viridis | F. viridis |
*predicted reconstruction of ancestral genome at a particular node. Below is the phylogeny
((((vesca:1,mandschurica:1)Anc4:1,viridis:1)Anc2:1,(daltoniana:1,nilgerrensis:1)Anc3:1)Anc1:1,iinumae:1)Anc0;