Correction of database SNP accession numbers misassigned to SNPs of the 8K IRSC apple SNP array

Publication Overview
TitleCorrection of database SNP accession numbers misassigned to SNPs of the 8K IRSC apple SNP array
AuthorsEdge-Garza DA, Villamil-Castro M, Main D, Hardner C.
TypeJournal Article
Journal NameTree Genetics & Genomes
Issue17
Year2021
Page(s)17
CitationEdge-Garza DA, Villamil-Castro M, Main D, Hardner C. Correction of database SNP accession numbers misassigned to SNPs of the 8K IRSC apple SNP array. 2021 Tree Genetics & Genomes 17:17

Abstract

Accurate SNP locus identifiers are essential for the correct matching and aggregation of multiple historical datasets. The National Center for Biotechnology Information (NCBI) issued unique “submitted SNP identification” numbers (ssIDs) for every published SNP submitted to its database. Discrepant ssID information was discovered for 78 SNPs for the 8K IRSC apple SNP array while attempting to collate multiple historical datasets, and a review of the archived SNP database from the NCBI led to their correction and a collation of SNP markers with no duplicate ssIDs. As the incorrect ssIDs were subsequently republished and uploaded to the Genome Database for Rosaceae, the aim of this short communication is to report the correct NCBI ssIDs for these 78 SNPs to correctly aggregate historical SNP data, prevent perpetuation of the misassigned ssIDs in further publications, and provide a citation for correcting the misassigned ssIDs in the Genome Database for Rosaceae (because the NCBI no longer supports storage of non-human SNP data).
Features
This publication contains information about 62 features:
Feature NameUniquenameType
RosBREEDSNP_SNP_CT_31019_Lg12RosBREEDSNP_SNP_CT_31019_Lg12genetic_marker
RosBREEDSNP_SNP_CT_34005032_Lg14RosBREEDSNP_SNP_CT_34005032_Lg14genetic_marker
RosBREEDSNP_SNP_CT_37335835_Lg5RosBREEDSNP_SNP_CT_37335835_Lg5genetic_marker
RosBREED_SNP_CT_38118641_Lg13RosBREED_SNP_CT_38118641_Lg13genetic_marker
RosBREEDSNP_SNP_CT_39835214_Lg3RosBREEDSNP_SNP_CT_39835214_Lg3genetic_marker
RosBREEDSNP_SNP_CT_60447_Lg3RosBREEDSNP_SNP_CT_60447_Lg3genetic_marker
RosBREEDSNP_SNP_CT_7022178_Lg8RosBREEDSNP_SNP_CT_7022178_Lg8genetic_marker
RosBREED_SNP_CT_9329089_Lg14RosBREED_SNP_CT_9329089_Lg14genetic_marker
RosBREED_SNP_GA_20320504_Lg2RosBREED_SNP_GA_20320504_Lg2genetic_marker
RosBREEDSNP_SNP_GA_20993315_Lg17RosBREEDSNP_SNP_GA_20993315_Lg17genetic_marker
RosBREEDSNP_SNP_GA_21608122_Lg12RosBREEDSNP_SNP_GA_21608122_Lg12genetic_marker
RosBREED_SNP_GA_23598147_Lg5RosBREED_SNP_GA_23598147_Lg5genetic_marker
RosBREEDSNP_SNP_GA_27113611_Lg17RosBREEDSNP_SNP_GA_27113611_Lg17genetic_marker
RosBREEDSNP_SNP_GA_27975536_Lg14RosBREEDSNP_SNP_GA_27975536_Lg14genetic_marker
RosBREEDSNP_SNP_GA_30021_Lg8RosBREEDSNP_SNP_GA_30021_Lg8genetic_marker
RosBREEDSNP_SNP_GA_31135974_Lg7RosBREEDSNP_SNP_GA_31135974_Lg7genetic_marker
RosBREEDSNP_SNP_GA_32560116_Lg10RosBREEDSNP_SNP_GA_32560116_Lg10genetic_marker
RosBREED_SNP_GA_34846029_Lg11RosBREED_SNP_GA_34846029_Lg11genetic_marker
RosBREEDSNP_SNP_GA_55718984_Lg15RosBREEDSNP_SNP_GA_55718984_Lg15genetic_marker
RosBREEDSNP_SNP_GA_8165546_Lg3RosBREEDSNP_SNP_GA_8165546_Lg3genetic_marker
RosBREEDSNP_SNP_GT_21216802_Lg9RosBREEDSNP_SNP_GT_21216802_Lg9genetic_marker
RosBREED_SNP_GT_22408468_Lg10RosBREED_SNP_GT_22408468_Lg10genetic_marker
RosBREEDSNP_SNP_GT_30185_Lg15RosBREEDSNP_SNP_GT_30185_Lg15genetic_marker
RosBREEDSNP_SNP_TC_111521_Lg2RosBREEDSNP_SNP_TC_111521_Lg2genetic_marker
RosBREEDSNP_SNP_TC_15037669_Lg6RosBREEDSNP_SNP_TC_15037669_Lg6genetic_marker

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