Correction of database SNP accession numbers misassigned to SNPs of the 8K IRSC apple SNP array

Publication Overview
TitleCorrection of database SNP accession numbers misassigned to SNPs of the 8K IRSC apple SNP array
AuthorsEdge-Garza DA, Villamil-Castro M, Main D, Hardner C.
TypeJournal Article
Journal NameTree Genetics & Genomes
Issue17
Year2021
Page(s)17
CitationEdge-Garza DA, Villamil-Castro M, Main D, Hardner C. Correction of database SNP accession numbers misassigned to SNPs of the 8K IRSC apple SNP array. 2021 Tree Genetics & Genomes 17:17

Abstract

Accurate SNP locus identifiers are essential for the correct matching and aggregation of multiple historical datasets. The National Center for Biotechnology Information (NCBI) issued unique “submitted SNP identification” numbers (ssIDs) for every published SNP submitted to its database. Discrepant ssID information was discovered for 78 SNPs for the 8K IRSC apple SNP array while attempting to collate multiple historical datasets, and a review of the archived SNP database from the NCBI led to their correction and a collation of SNP markers with no duplicate ssIDs. As the incorrect ssIDs were subsequently republished and uploaded to the Genome Database for Rosaceae, the aim of this short communication is to report the correct NCBI ssIDs for these 78 SNPs to correctly aggregate historical SNP data, prevent perpetuation of the misassigned ssIDs in further publications, and provide a citation for correcting the misassigned ssIDs in the Genome Database for Rosaceae (because the NCBI no longer supports storage of non-human SNP data).
Features
This publication contains information about 62 features:
Feature NameUniquenameType
RosBREEDSNP_SNP_TC_2419416_Lg16RosBREEDSNP_SNP_TC_2419416_Lg16genetic_marker
RosBREEDSNP_SNP_TC_30595771_Lg10RosBREEDSNP_SNP_TC_30595771_Lg10genetic_marker
RosBREEDSNP_SNP_TC_32129472_Lg3RosBREEDSNP_SNP_TC_32129472_Lg3genetic_marker
RosBREEDSNP_SNP_TC_3297840_Lg16RosBREEDSNP_SNP_TC_3297840_Lg16genetic_marker
RosBREEDSNP_SNP_TC_3303558_Lg16RosBREEDSNP_SNP_TC_3303558_Lg16genetic_marker
RosBREEDSNP_SNP_TC_7202016_Lg17RosBREEDSNP_SNP_TC_7202016_Lg17genetic_marker
RosBREEDSNP_SNP_TC_7275449_Lg12RosBREEDSNP_SNP_TC_7275449_Lg12genetic_marker
RosBREEDSNP_SNP_TC_8087130_Lg2RosBREEDSNP_SNP_TC_8087130_Lg2genetic_marker
RosBREED_SNP_TG_14005103_Lg17RosBREED_SNP_TG_14005103_Lg17genetic_marker
RosBREED_SNP_TG_15738487_Lg11RosBREED_SNP_TG_15738487_Lg11genetic_marker
RosBREEDSNP_SNP_TG_23405001_Lg16RosBREEDSNP_SNP_TG_23405001_Lg16genetic_marker
RosBREEDSNP_SNP_TG_3193686_Lg16RosBREEDSNP_SNP_TG_3193686_Lg16genetic_marker

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