The genome of the domesticated apple (Malus x domestica Borkh.)

Publication Overview
TitleThe genome of the domesticated apple (Malus x domestica Borkh.)
AuthorsVelasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R
TypeJournal Article
Journal NameNature Genetics
Volume42
Issue10
Year2010
Page(s)833-839
CitationVelasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.

Abstract

We report a high-quality draft genome sequence of the domesticated apple (Malus × domestica). We show that a relatively recent (>50 million years ago) genome-wide duplication (GWD) has resulted in the transition from nine ancestral chromosomes to 17 chromosomes in the Pyreae. Traces of older GWDs partly support the monophyly of the ancestral paleohexaploidy of eudicots. Phylogenetic reconstruction of Pyreae and the genus Malus, relative to major Rosaceae taxa, identified the progenitor of the cultivated apple as M. sieversii. Expansion of gene families reported to be involved in fruit development may explain formation of the pome, a Pyreae-specific false fruit that develops by proliferation of the basal part of the sepals, the receptacle. In apple, a subclade of MADS-box genes, normally involved in flower and fruit development, is expanded to include 15 members, as are other gene families involved in Rosaceae-specific metabolism, such as transport and assimilation of sorbitol.

Features
This publication contains information about 1,769 features:
Feature NameUniquenameType
GDsnp01195GDsnp01195genetic_marker
GDsnp00619GDsnp00619genetic_marker
GDsnp01965GDsnp01965genetic_marker
GDsnp01336GDsnp01336genetic_marker
GDsnp00221GDsnp00221genetic_marker
GDsnp02025GDsnp02025genetic_marker
GDsnp00375GDsnp00375genetic_marker
GDsnp01567GDsnp01567genetic_marker
GDsnp01026GDsnp01026genetic_marker
GDsnp00226GDsnp00226genetic_marker
Sod_3Sod_3genetic_marker
GDsnp00388GDsnp00388genetic_marker
GDsnp00681GDsnp00681genetic_marker
GDsnp00232GDsnp00232genetic_marker
GDsnp00283GDsnp00283genetic_marker
GDsnp00127GDsnp00127genetic_marker
CH01b12xCH01b12xgenetic_marker
GDsnp02490GDsnp02490genetic_marker
GDsnp01485GDsnp01485genetic_marker
GDsnp00431GDsnp00431genetic_marker
GDsnp00136GDsnp00136genetic_marker
GDsnp01294GDsnp01294genetic_marker
GDsnp00302GDsnp00302genetic_marker
GDsnp00160GDsnp00160genetic_marker
GDsnp00177GDsnp00177genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Apple Integrated map