Construction of an Integrated High Density Simple Sequence Repeat Linkage Map in Cultivated Strawberry (Fragaria x ananassa) and its Applicability.

Publication Overview
TitleConstruction of an integrated high density simple sequence repeat linkage map in cultivated strawberry (Fragaria × ananassa) and its applicability
AuthorsIsobe SN, Hirakawa H, Sato S, Maeda F, Ishikawa M, Mori T, Yamamoto Y, Shirasawa K, Kimura M, Fukami M, Hashizume F, Tsuji T, Sasamoto S, Kato M, Nanri K, Tsuruoka H, Minami C, Takahashi C, Wada T, Ono A, Kawashima K, Nakazaki N, Kishida Y, Kohara M, Nakayama S, Yamada M, Fujishiro T, Watanabe A, Tabata S
TypeJournal Article
Journal NameDNA research : an international journal for rapid publication of reports on genes and genomes
Volume20
Issue1
Year2013
Page(s)79-92
CitationIsobe SN, Hirakawa H, Sato S, Maeda F, Ishikawa M, Mori T, Yamamoto Y, Shirasawa K, Kimura M, Fukami M, Hashizume F, Tsuji T, Sasamoto S, Kato M, Nanri K, Tsuruoka H, Minami C, Takahashi C, Wada T, Ono A, Kawashima K, Nakazaki N, Kishida Y, Kohara M, Nakayama S, Yamada M, Fujishiro T, Watanabe A, Tabata S. Construction of an integrated high density simple sequence repeat linkage map in cultivated strawberry (Fragaria × ananassa) and its applicability. DNA research : an international journal for rapid publication of reports on genes and genomes. 2013 Feb; 20(1):79-92.

Abstract

The cultivated strawberry (Fragaria × ananassa) is an octoploid (2n = 8x = 56) of the Rosaceae family whose genomic architecture is still controversial. Several recent studies support the AAA'A'BBB'B' model, but its complexity has hindered genetic and genomic analysis of this important crop. To overcome this difficulty and to assist genome-wide analysis of F. × ananassa, we constructed an integrated linkage map by organizing a total of 4474 of simple sequence repeat (SSR) markers collected from published Fragaria sequences, including 3746 SSR markers [Fragaria vesca expressed sequence tag (EST)-derived SSR markers] derived from F. vesca ESTs, 603 markers (F. × ananassa EST-derived SSR markers) from F. × ananassa ESTs, and 125 markers (F. × ananassa transcriptome-derived SSR markers) from F. × ananassa transcripts. Along with the previously published SSR markers, these markers were mapped onto five parent-specific linkage maps derived from three mapping populations, which were then assembled into an integrated linkage map. The constructed map consists of 1856 loci in 28 linkage groups (LGs) that total 2364.1 cM in length. Macrosynteny at the chromosome level was observed between the LGs of F. × ananassa and the genome of F. vesca. Variety distinction on 129 F. × ananassa lines was demonstrated using 45 selected SSR markers.

Features
This publication contains information about 4,482 features:
Feature NameUniquenameType
FVES3023FVES3023genetic_marker
FVES3024FVES3024genetic_marker
FVES3025FVES3025genetic_marker
FVES3026FVES3026genetic_marker
FVES3027FVES3027genetic_marker
FVES3028FVES3028genetic_marker
FVES3029FVES3029genetic_marker
FVES3030FVES3030genetic_marker
FVES3031FVES3031genetic_marker
FVES3032FVES3032genetic_marker
FVES3033FVES3033genetic_marker
FVES3034FVES3034genetic_marker
FVES3035FVES3035genetic_marker
FVES3036FVES3036genetic_marker
FVES3037FVES3037genetic_marker
FVES3038FVES3038genetic_marker
FVES3039FVES3039genetic_marker
FVES3040FVES3040genetic_marker
FVES3041FVES3041genetic_marker
FVES3042FVES3042genetic_marker
FVES3043FVES3043genetic_marker
FVES3044FVES3044genetic_marker
FVES3045FVES3045genetic_marker
FVES3046FVES3046genetic_marker
FVES3047FVES3047genetic_marker

Pages

Stocks
This publication contains information about 7 stocks:
Stock NameUniquenameType
SACHINOKASACHINOKAaccession
02-1902-19accession
akihimeakihimeaccession
KaorinoKaorinoaccession
02129210212921accession
02-19_x_Sachinoka02-19_x_Sachinokaaccession
Kaorino_x_AkihimeKaorino_x_Akihimeaccession