Construction of an Integrated High Density Simple Sequence Repeat Linkage Map in Cultivated Strawberry (Fragaria x ananassa) and its Applicability.

Publication Overview
TitleConstruction of an integrated high density simple sequence repeat linkage map in cultivated strawberry (Fragaria × ananassa) and its applicability
AuthorsIsobe SN, Hirakawa H, Sato S, Maeda F, Ishikawa M, Mori T, Yamamoto Y, Shirasawa K, Kimura M, Fukami M, Hashizume F, Tsuji T, Sasamoto S, Kato M, Nanri K, Tsuruoka H, Minami C, Takahashi C, Wada T, Ono A, Kawashima K, Nakazaki N, Kishida Y, Kohara M, Nakayama S, Yamada M, Fujishiro T, Watanabe A, Tabata S
TypeJournal Article
Journal NameDNA research : an international journal for rapid publication of reports on genes and genomes
Volume20
Issue1
Year2013
Page(s)79-92
CitationIsobe SN, Hirakawa H, Sato S, Maeda F, Ishikawa M, Mori T, Yamamoto Y, Shirasawa K, Kimura M, Fukami M, Hashizume F, Tsuji T, Sasamoto S, Kato M, Nanri K, Tsuruoka H, Minami C, Takahashi C, Wada T, Ono A, Kawashima K, Nakazaki N, Kishida Y, Kohara M, Nakayama S, Yamada M, Fujishiro T, Watanabe A, Tabata S. Construction of an integrated high density simple sequence repeat linkage map in cultivated strawberry (Fragaria × ananassa) and its applicability. DNA research : an international journal for rapid publication of reports on genes and genomes. 2013 Feb; 20(1):79-92.

Abstract

The cultivated strawberry (Fragaria × ananassa) is an octoploid (2n = 8x = 56) of the Rosaceae family whose genomic architecture is still controversial. Several recent studies support the AAA'A'BBB'B' model, but its complexity has hindered genetic and genomic analysis of this important crop. To overcome this difficulty and to assist genome-wide analysis of F. × ananassa, we constructed an integrated linkage map by organizing a total of 4474 of simple sequence repeat (SSR) markers collected from published Fragaria sequences, including 3746 SSR markers [Fragaria vesca expressed sequence tag (EST)-derived SSR markers] derived from F. vesca ESTs, 603 markers (F. × ananassa EST-derived SSR markers) from F. × ananassa ESTs, and 125 markers (F. × ananassa transcriptome-derived SSR markers) from F. × ananassa transcripts. Along with the previously published SSR markers, these markers were mapped onto five parent-specific linkage maps derived from three mapping populations, which were then assembled into an integrated linkage map. The constructed map consists of 1856 loci in 28 linkage groups (LGs) that total 2364.1 cM in length. Macrosynteny at the chromosome level was observed between the LGs of F. × ananassa and the genome of F. vesca. Variety distinction on 129 F. × ananassa lines was demonstrated using 45 selected SSR markers.

Features
This publication contains information about 4,482 features:
Feature NameUniquenameType
FVES3398FVES3398genetic_marker
FVES3399FVES3399genetic_marker
FVES3400FVES3400genetic_marker
FVES3401FVES3401genetic_marker
FVES3402FVES3402genetic_marker
FVES3403FVES3403genetic_marker
FVES3404FVES3404genetic_marker
FVES3405FVES3405genetic_marker
FVES3406FVES3406genetic_marker
FVES3407FVES3407genetic_marker
FVES3408FVES3408genetic_marker
FVES3409FVES3409genetic_marker
FVES3410FVES3410genetic_marker
FVES3411FVES3411genetic_marker
FVES3412FVES3412genetic_marker
FVES3413FVES3413genetic_marker
FVES3414FVES3414genetic_marker
FVES3415FVES3415genetic_marker
FVES3416FVES3416genetic_marker
FVES3417FVES3417genetic_marker
FVES3418FVES3418genetic_marker
FVES3419FVES3419genetic_marker
FVES3420FVES3420genetic_marker
FVES3421FVES3421genetic_marker
FVES3422FVES3422genetic_marker

Pages

Stocks
This publication contains information about 7 stocks:
Stock NameUniquenameType
SACHINOKASACHINOKAaccession
02-1902-19accession
akihimeakihimeaccession
KaorinoKaorinoaccession
02129210212921accession
02-19_x_Sachinoka02-19_x_Sachinokaaccession
Kaorino_x_AkihimeKaorino_x_Akihimeaccession