Publication Overview
TitleConstruction of a high-density genetic linkage map in pear (Pyrus communis x Pyrus pyrifolia nakai) using SSRs and SNPs developed by SLAF-seq
AuthorsWang L, Li X, Wang L, Xue H, Wu J, Yin H, Zhang S
TypeJournal Article
Journal NameScientia Horticulturae
Volume218
Year2017
Page(s)198-204
CitationWang L, Li X, Wang L, Xue H, Wu J, Yin H, Zhang S. Construction of a high-density genetic linkage map in pear (Pyrus communis x Pyrus pyrifolia nakai) using SSRs and SNPs developed by SLAF-seq. Scientia Horticulturae. 2017; 218:198-204.

Abstract

High-density genetic maps are valuable and effective tools for exploring complex quantitative traits, including mapping quantitative trait loci and developing linkage markers. Here, we developed 4797 single nucleotide polymorphic (SNP) markers using specific length amplified fragment sequencing. As a result, 4664 SNP markers, combined with 201 simple sequence repeat markers, were used to build a high-density linkage map ofthe F1 population ‘Red Clapp’s Favorite’(Pyrus communis L.) × ‘Mansoo’(Pyrus pyrifolia Nakai). The integrated map contained 17 linkage groups, spanning 2,703.61 cM, with an average distance of 0.56 cM between adjacent markers. Each linkage groups anchored from 6 to 18 SSR markers. Additionally, detailed information on the female and male maps was determined. We also identified the SNP markers’ physical map locations in the P. communis L. ‘Bartlett’ genome. The results will be useful for identifying candidate genes associated with economically important characteristics.
Features
This publication contains information about 4,664 features:
Feature NameUniquenameType
PcoPpy_Marker73550PcoPpy_Marker73550genetic_marker
PcoPpy_Marker73551PcoPpy_Marker73551genetic_marker
PcoPpy_Marker73552PcoPpy_Marker73552genetic_marker
PcoPpy_Marker73553PcoPpy_Marker73553genetic_marker
PcoPpy_Marker73554PcoPpy_Marker73554genetic_marker
PcoPpy_Marker73587PcoPpy_Marker73587genetic_marker
PcoPpy_Marker73670PcoPpy_Marker73670genetic_marker
PcoPpy_Marker73671PcoPpy_Marker73671genetic_marker
PcoPpy_Marker7383PcoPpy_Marker7383genetic_marker
PcoPpy_Marker7384PcoPpy_Marker7384genetic_marker
PcoPpy_Marker7412PcoPpy_Marker7412genetic_marker
PcoPpy_Marker7413PcoPpy_Marker7413genetic_marker
PcoPpy_Marker7414PcoPpy_Marker7414genetic_marker
PcoPpy_Marker74591PcoPpy_Marker74591genetic_marker
PcoPpy_Marker74592PcoPpy_Marker74592genetic_marker
PcoPpy_Marker74593PcoPpy_Marker74593genetic_marker
PcoPpy_Marker74971PcoPpy_Marker74971genetic_marker
PcoPpy_Marker74972PcoPpy_Marker74972genetic_marker
PcoPpy_Marker74973PcoPpy_Marker74973genetic_marker
PcoPpy_Marker74974PcoPpy_Marker74974genetic_marker
PcoPpy_Marker74977PcoPpy_Marker74977genetic_marker
PcoPpy_Marker75269PcoPpy_Marker75269genetic_marker
PcoPpy_Marker75270PcoPpy_Marker75270genetic_marker
PcoPpy_Marker75274PcoPpy_Marker75274genetic_marker
PcoPpy_Marker75275PcoPpy_Marker75275genetic_marker

Pages

Featuremaps
This publication contains information about 3 maps:
Map Name
Pear-Rcf-F1-female
Pear-M-F1-male
Pear-RM-F1-Integrated
Stocks
This publication contains information about 3 stocks:
Stock NameUniquenameType
Red_Clapp’s_FavoriteRed_Clapp’s_Favoriteaccession
MansooMansooaccession
Red_Clapp’s_Favorite_x_MansooRed_Clapp’s_Favorite_x_Mansoopopulation