Publication Overview
TitleConstruction of a high-density genetic linkage map in pear (Pyrus communis x Pyrus pyrifolia nakai) using SSRs and SNPs developed by SLAF-seq
AuthorsWang L, Li X, Wang L, Xue H, Wu J, Yin H, Zhang S
TypeJournal Article
Journal NameScientia Horticulturae
Volume218
Year2017
Page(s)198-204
CitationWang L, Li X, Wang L, Xue H, Wu J, Yin H, Zhang S. Construction of a high-density genetic linkage map in pear (Pyrus communis x Pyrus pyrifolia nakai) using SSRs and SNPs developed by SLAF-seq. Scientia Horticulturae. 2017; 218:198-204.

Abstract

High-density genetic maps are valuable and effective tools for exploring complex quantitative traits, including mapping quantitative trait loci and developing linkage markers. Here, we developed 4797 single nucleotide polymorphic (SNP) markers using specific length amplified fragment sequencing. As a result, 4664 SNP markers, combined with 201 simple sequence repeat markers, were used to build a high-density linkage map ofthe F1 population ‘Red Clapp’s Favorite’(Pyrus communis L.) × ‘Mansoo’(Pyrus pyrifolia Nakai). The integrated map contained 17 linkage groups, spanning 2,703.61 cM, with an average distance of 0.56 cM between adjacent markers. Each linkage groups anchored from 6 to 18 SSR markers. Additionally, detailed information on the female and male maps was determined. We also identified the SNP markers’ physical map locations in the P. communis L. ‘Bartlett’ genome. The results will be useful for identifying candidate genes associated with economically important characteristics.
Features
This publication contains information about 4,664 features:
Feature NameUniquenameType
PcoPpy_Marker88519PcoPpy_Marker88519genetic_marker
PcoPpy_Marker88598PcoPpy_Marker88598genetic_marker
PcoPpy_Marker88599PcoPpy_Marker88599genetic_marker
PcoPpy_Marker8860PcoPpy_Marker8860genetic_marker
PcoPpy_Marker88600PcoPpy_Marker88600genetic_marker
PcoPpy_Marker88601PcoPpy_Marker88601genetic_marker
PcoPpy_Marker88602PcoPpy_Marker88602genetic_marker
PcoPpy_Marker88603PcoPpy_Marker88603genetic_marker
PcoPpy_Marker88604PcoPpy_Marker88604genetic_marker
PcoPpy_Marker88605PcoPpy_Marker88605genetic_marker
PcoPpy_Marker88606PcoPpy_Marker88606genetic_marker
PcoPpy_Marker88607PcoPpy_Marker88607genetic_marker
PcoPpy_Marker8861PcoPpy_Marker8861genetic_marker
PcoPpy_Marker89111PcoPpy_Marker89111genetic_marker
PcoPpy_Marker89112PcoPpy_Marker89112genetic_marker
PcoPpy_Marker89154PcoPpy_Marker89154genetic_marker
PcoPpy_Marker89155PcoPpy_Marker89155genetic_marker
PcoPpy_Marker89156PcoPpy_Marker89156genetic_marker
PcoPpy_Marker89160PcoPpy_Marker89160genetic_marker
PcoPpy_Marker89303PcoPpy_Marker89303genetic_marker
PcoPpy_Marker89304PcoPpy_Marker89304genetic_marker
PcoPpy_Marker89306PcoPpy_Marker89306genetic_marker
PcoPpy_Marker89311PcoPpy_Marker89311genetic_marker
PcoPpy_Marker89539PcoPpy_Marker89539genetic_marker
PcoPpy_Marker89586PcoPpy_Marker89586genetic_marker

Pages

Featuremaps
This publication contains information about 3 maps:
Map Name
Pear-Rcf-F1-female
Pear-M-F1-male
Pear-RM-F1-Integrated
Stocks
This publication contains information about 3 stocks:
Stock NameUniquenameType
Red_Clapp’s_FavoriteRed_Clapp’s_Favoriteaccession
MansooMansooaccession
Red_Clapp’s_Favorite_x_MansooRed_Clapp’s_Favorite_x_Mansoopopulation