Publication Overview
TitleConstruction of a high-density genetic linkage map in pear (Pyrus communis x Pyrus pyrifolia nakai) using SSRs and SNPs developed by SLAF-seq
AuthorsWang L, Li X, Wang L, Xue H, Wu J, Yin H, Zhang S
TypeJournal Article
Journal NameScientia Horticulturae
Volume218
Year2017
Page(s)198-204
CitationWang L, Li X, Wang L, Xue H, Wu J, Yin H, Zhang S. Construction of a high-density genetic linkage map in pear (Pyrus communis x Pyrus pyrifolia nakai) using SSRs and SNPs developed by SLAF-seq. Scientia Horticulturae. 2017; 218:198-204.

Abstract

High-density genetic maps are valuable and effective tools for exploring complex quantitative traits, including mapping quantitative trait loci and developing linkage markers. Here, we developed 4797 single nucleotide polymorphic (SNP) markers using specific length amplified fragment sequencing. As a result, 4664 SNP markers, combined with 201 simple sequence repeat markers, were used to build a high-density linkage map ofthe F1 population ‘Red Clapp’s Favorite’(Pyrus communis L.) × ‘Mansoo’(Pyrus pyrifolia Nakai). The integrated map contained 17 linkage groups, spanning 2,703.61 cM, with an average distance of 0.56 cM between adjacent markers. Each linkage groups anchored from 6 to 18 SSR markers. Additionally, detailed information on the female and male maps was determined. We also identified the SNP markers’ physical map locations in the P. communis L. ‘Bartlett’ genome. The results will be useful for identifying candidate genes associated with economically important characteristics.
Features
This publication contains information about 4,664 features:
Feature NameUniquenameType
PcoPpy_Marker111889PcoPpy_Marker111889genetic_marker
PcoPpy_Marker111890PcoPpy_Marker111890genetic_marker
PcoPpy_Marker112064PcoPpy_Marker112064genetic_marker
PcoPpy_Marker112066PcoPpy_Marker112066genetic_marker
PcoPpy_Marker112068PcoPpy_Marker112068genetic_marker
PcoPpy_Marker112069PcoPpy_Marker112069genetic_marker
PcoPpy_Marker112071PcoPpy_Marker112071genetic_marker
PcoPpy_Marker112072PcoPpy_Marker112072genetic_marker
PcoPpy_Marker112073PcoPpy_Marker112073genetic_marker
PcoPpy_Marker112075PcoPpy_Marker112075genetic_marker
PcoPpy_Marker112078PcoPpy_Marker112078genetic_marker
PcoPpy_Marker112218PcoPpy_Marker112218genetic_marker
PcoPpy_Marker112219PcoPpy_Marker112219genetic_marker
PcoPpy_Marker112220PcoPpy_Marker112220genetic_marker
PcoPpy_Marker112351PcoPpy_Marker112351genetic_marker
PcoPpy_Marker112685PcoPpy_Marker112685genetic_marker
PcoPpy_Marker113140PcoPpy_Marker113140genetic_marker
PcoPpy_Marker113141PcoPpy_Marker113141genetic_marker
PcoPpy_Marker113179PcoPpy_Marker113179genetic_marker
PcoPpy_Marker113564PcoPpy_Marker113564genetic_marker
PcoPpy_Marker113565PcoPpy_Marker113565genetic_marker
PcoPpy_Marker113566PcoPpy_Marker113566genetic_marker
PcoPpy_Marker113739PcoPpy_Marker113739genetic_marker
PcoPpy_Marker113740PcoPpy_Marker113740genetic_marker
PcoPpy_Marker113741PcoPpy_Marker113741genetic_marker

Pages

Featuremaps
This publication contains information about 3 maps:
Map Name
Pear-Rcf-F1-female
Pear-M-F1-male
Pear-RM-F1-Integrated
Stocks
This publication contains information about 3 stocks:
Stock NameUniquenameType
Red_Clapp’s_FavoriteRed_Clapp’s_Favoriteaccession
MansooMansooaccession
Red_Clapp’s_Favorite_x_MansooRed_Clapp’s_Favorite_x_Mansoopopulation