Publication Overview
TitleConstruction of a high-density genetic linkage map in pear (Pyrus communis x Pyrus pyrifolia nakai) using SSRs and SNPs developed by SLAF-seq
AuthorsWang L, Li X, Wang L, Xue H, Wu J, Yin H, Zhang S
TypeJournal Article
Journal NameScientia Horticulturae
Volume218
Year2017
Page(s)198-204
CitationWang L, Li X, Wang L, Xue H, Wu J, Yin H, Zhang S. Construction of a high-density genetic linkage map in pear (Pyrus communis x Pyrus pyrifolia nakai) using SSRs and SNPs developed by SLAF-seq. Scientia Horticulturae. 2017; 218:198-204.

Abstract

High-density genetic maps are valuable and effective tools for exploring complex quantitative traits, including mapping quantitative trait loci and developing linkage markers. Here, we developed 4797 single nucleotide polymorphic (SNP) markers using specific length amplified fragment sequencing. As a result, 4664 SNP markers, combined with 201 simple sequence repeat markers, were used to build a high-density linkage map ofthe F1 population ‘Red Clapp’s Favorite’(Pyrus communis L.) × ‘Mansoo’(Pyrus pyrifolia Nakai). The integrated map contained 17 linkage groups, spanning 2,703.61 cM, with an average distance of 0.56 cM between adjacent markers. Each linkage groups anchored from 6 to 18 SSR markers. Additionally, detailed information on the female and male maps was determined. We also identified the SNP markers’ physical map locations in the P. communis L. ‘Bartlett’ genome. The results will be useful for identifying candidate genes associated with economically important characteristics.
Features
This publication contains information about 4,664 features:
Feature NameUniquenameType
PcoPpy_Marker38670PcoPpy_Marker38670genetic_marker
PcoPpy_Marker386939PcoPpy_Marker386939genetic_marker
PcoPpy_Marker386941PcoPpy_Marker386941genetic_marker
PcoPpy_Marker3882PcoPpy_Marker3882genetic_marker
PcoPpy_Marker3883PcoPpy_Marker3883genetic_marker
PcoPpy_Marker3884PcoPpy_Marker3884genetic_marker
PcoPpy_Marker3885PcoPpy_Marker3885genetic_marker
PcoPpy_Marker3886PcoPpy_Marker3886genetic_marker
PcoPpy_Marker3887PcoPpy_Marker3887genetic_marker
PcoPpy_Marker388736PcoPpy_Marker388736genetic_marker
PcoPpy_Marker388738PcoPpy_Marker388738genetic_marker
PcoPpy_Marker388739PcoPpy_Marker388739genetic_marker
PcoPpy_Marker388740PcoPpy_Marker388740genetic_marker
PcoPpy_Marker388741PcoPpy_Marker388741genetic_marker
PcoPpy_Marker388742PcoPpy_Marker388742genetic_marker
PcoPpy_Marker388743PcoPpy_Marker388743genetic_marker
PcoPpy_Marker388744PcoPpy_Marker388744genetic_marker
PcoPpy_Marker388745PcoPpy_Marker388745genetic_marker
PcoPpy_Marker3888PcoPpy_Marker3888genetic_marker
PcoPpy_Marker389169PcoPpy_Marker389169genetic_marker
PcoPpy_Marker389170PcoPpy_Marker389170genetic_marker
PcoPpy_Marker389172PcoPpy_Marker389172genetic_marker
PcoPpy_Marker38927PcoPpy_Marker38927genetic_marker
PcoPpy_Marker38928PcoPpy_Marker38928genetic_marker
PcoPpy_Marker389660PcoPpy_Marker389660genetic_marker

Pages

Featuremaps
This publication contains information about 3 maps:
Map Name
Pear-Rcf-F1-female
Pear-M-F1-male
Pear-RM-F1-Integrated
Stocks
This publication contains information about 3 stocks:
Stock NameUniquenameType
Red_Clapp’s_FavoriteRed_Clapp’s_Favoriteaccession
MansooMansooaccession
Red_Clapp’s_Favorite_x_MansooRed_Clapp’s_Favorite_x_Mansoopopulation