Publication Overview
TitleConstruction of a high-density genetic linkage map in pear (Pyrus communis x Pyrus pyrifolia nakai) using SSRs and SNPs developed by SLAF-seq
AuthorsWang L, Li X, Wang L, Xue H, Wu J, Yin H, Zhang S
TypeJournal Article
Journal NameScientia Horticulturae
Volume218
Year2017
Page(s)198-204
CitationWang L, Li X, Wang L, Xue H, Wu J, Yin H, Zhang S. Construction of a high-density genetic linkage map in pear (Pyrus communis x Pyrus pyrifolia nakai) using SSRs and SNPs developed by SLAF-seq. Scientia Horticulturae. 2017; 218:198-204.

Abstract

High-density genetic maps are valuable and effective tools for exploring complex quantitative traits, including mapping quantitative trait loci and developing linkage markers. Here, we developed 4797 single nucleotide polymorphic (SNP) markers using specific length amplified fragment sequencing. As a result, 4664 SNP markers, combined with 201 simple sequence repeat markers, were used to build a high-density linkage map ofthe F1 population ‘Red Clapp’s Favorite’(Pyrus communis L.) × ‘Mansoo’(Pyrus pyrifolia Nakai). The integrated map contained 17 linkage groups, spanning 2,703.61 cM, with an average distance of 0.56 cM between adjacent markers. Each linkage groups anchored from 6 to 18 SSR markers. Additionally, detailed information on the female and male maps was determined. We also identified the SNP markers’ physical map locations in the P. communis L. ‘Bartlett’ genome. The results will be useful for identifying candidate genes associated with economically important characteristics.
Features
This publication contains information about 4,664 features:
Feature NameUniquenameType
PcoPpy_Marker108969PcoPpy_Marker108969genetic_marker
PcoPpy_Marker109262PcoPpy_Marker109262genetic_marker
PcoPpy_Marker109267PcoPpy_Marker109267genetic_marker
PcoPpy_Marker109295PcoPpy_Marker109295genetic_marker
PcoPpy_Marker109296PcoPpy_Marker109296genetic_marker
PcoPpy_Marker109300PcoPpy_Marker109300genetic_marker
PcoPpy_Marker109304PcoPpy_Marker109304genetic_marker
PcoPpy_Marker109638PcoPpy_Marker109638genetic_marker
PcoPpy_Marker109641PcoPpy_Marker109641genetic_marker
PcoPpy_Marker109644PcoPpy_Marker109644genetic_marker
PcoPpy_Marker109647PcoPpy_Marker109647genetic_marker
PcoPpy_Marker109648PcoPpy_Marker109648genetic_marker
PcoPpy_Marker109649PcoPpy_Marker109649genetic_marker
PcoPpy_Marker109692PcoPpy_Marker109692genetic_marker
PcoPpy_Marker10978PcoPpy_Marker10978genetic_marker
PcoPpy_Marker10979PcoPpy_Marker10979genetic_marker
PcoPpy_Marker10983PcoPpy_Marker10983genetic_marker
PcoPpy_Marker110676PcoPpy_Marker110676genetic_marker
PcoPpy_Marker111320PcoPpy_Marker111320genetic_marker
PcoPpy_Marker111405PcoPpy_Marker111405genetic_marker
PcoPpy_Marker111406PcoPpy_Marker111406genetic_marker
PcoPpy_Marker111703PcoPpy_Marker111703genetic_marker
PcoPpy_Marker111705PcoPpy_Marker111705genetic_marker
PcoPpy_Marker111707PcoPpy_Marker111707genetic_marker
PcoPpy_Marker111711PcoPpy_Marker111711genetic_marker

Pages

Featuremaps
This publication contains information about 3 maps:
Map Name
Pear-Rcf-F1-female
Pear-M-F1-male
Pear-RM-F1-Integrated
Stocks
This publication contains information about 3 stocks:
Stock NameUniquenameType
Red_Clapp’s_FavoriteRed_Clapp’s_Favoritecultivar
MansooMansoocultivar
Red_Clapp’s_Favorite_x_MansooRed_Clapp’s_Favorite_x_Mansoopopulation