Publication Overview
TitleConstruction of a high-density genetic linkage map in pear (Pyrus communis x Pyrus pyrifolia nakai) using SSRs and SNPs developed by SLAF-seq
AuthorsWang L, Li X, Wang L, Xue H, Wu J, Yin H, Zhang S
TypeJournal Article
Journal NameScientia Horticulturae
Volume218
Year2017
Page(s)198-204
CitationWang L, Li X, Wang L, Xue H, Wu J, Yin H, Zhang S. Construction of a high-density genetic linkage map in pear (Pyrus communis x Pyrus pyrifolia nakai) using SSRs and SNPs developed by SLAF-seq. Scientia Horticulturae. 2017; 218:198-204.

Abstract

High-density genetic maps are valuable and effective tools for exploring complex quantitative traits, including mapping quantitative trait loci and developing linkage markers. Here, we developed 4797 single nucleotide polymorphic (SNP) markers using specific length amplified fragment sequencing. As a result, 4664 SNP markers, combined with 201 simple sequence repeat markers, were used to build a high-density linkage map ofthe F1 population ‘Red Clapp’s Favorite’(Pyrus communis L.) × ‘Mansoo’(Pyrus pyrifolia Nakai). The integrated map contained 17 linkage groups, spanning 2,703.61 cM, with an average distance of 0.56 cM between adjacent markers. Each linkage groups anchored from 6 to 18 SSR markers. Additionally, detailed information on the female and male maps was determined. We also identified the SNP markers’ physical map locations in the P. communis L. ‘Bartlett’ genome. The results will be useful for identifying candidate genes associated with economically important characteristics.
Features
This publication contains information about 4,664 features:
Feature NameUniquenameType
PcoPpy_Marker113742PcoPpy_Marker113742genetic_marker
PcoPpy_Marker113743PcoPpy_Marker113743genetic_marker
PcoPpy_Marker113744PcoPpy_Marker113744genetic_marker
PcoPpy_Marker113745PcoPpy_Marker113745genetic_marker
PcoPpy_Marker113817PcoPpy_Marker113817genetic_marker
PcoPpy_Marker113818PcoPpy_Marker113818genetic_marker
PcoPpy_Marker113819PcoPpy_Marker113819genetic_marker
PcoPpy_Marker113820PcoPpy_Marker113820genetic_marker
PcoPpy_Marker113821PcoPpy_Marker113821genetic_marker
PcoPpy_Marker113822PcoPpy_Marker113822genetic_marker
PcoPpy_Marker113823PcoPpy_Marker113823genetic_marker
PcoPpy_Marker113824PcoPpy_Marker113824genetic_marker
PcoPpy_Marker113825PcoPpy_Marker113825genetic_marker
PcoPpy_Marker113827PcoPpy_Marker113827genetic_marker
PcoPpy_Marker113828PcoPpy_Marker113828genetic_marker
PcoPpy_Marker113829PcoPpy_Marker113829genetic_marker
PcoPpy_Marker113830PcoPpy_Marker113830genetic_marker
PcoPpy_Marker113831PcoPpy_Marker113831genetic_marker
PcoPpy_Marker113832PcoPpy_Marker113832genetic_marker
PcoPpy_Marker114220PcoPpy_Marker114220genetic_marker
PcoPpy_Marker115602PcoPpy_Marker115602genetic_marker
PcoPpy_Marker115603PcoPpy_Marker115603genetic_marker
PcoPpy_Marker115605PcoPpy_Marker115605genetic_marker
PcoPpy_Marker115609PcoPpy_Marker115609genetic_marker
PcoPpy_Marker115610PcoPpy_Marker115610genetic_marker

Pages

Featuremaps
This publication contains information about 3 maps:
Map Name
Pear-Rcf-F1-female
Pear-M-F1-male
Pear-RM-F1-Integrated
Stocks
This publication contains information about 3 stocks:
Stock NameUniquenameType
Red_Clapp’s_FavoriteRed_Clapp’s_Favoriteaccession
MansooMansooaccession
Red_Clapp’s_Favorite_x_MansooRed_Clapp’s_Favorite_x_Mansoopopulation