RC0G0067400, mRNA:RC0G0067400 () Rosa chinensis

Transcript Overview


Name	RC0G0067400
Unique Name	mRNA:RC0G0067400
Type	mRNA
Organism	Rosa chinensis ()
Sequence length	208

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr00	chromosome	Chr00:7744308..7745892 -	Rosa chinensis Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
BLASTx of Rosa chinensis v1.0 transcripts vs TAIR10	2018-02-22
BLASTx of Rosa chinensis v1.0 transcripts vs UniProt Swissprot	2018-02-21
InterProScan Analysis for Rosa chinensis v1.0 transcripts	2018-02-21
BLASTx of Rosa chinensis v1.0 transcripts vs UniProt TrEMBL	2018-02-27
BLASTx of Rosa chinensis v1.0 transcripts vs NCBI nr	2018-02-28
Rosa chinensis Whole Genome v1.0 Assembly & Annotation	2018-02-20

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
pprcL004	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)	Prunus persica
mdrcL204	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	Malus x domestica
rcroR078	Rubus occidentalis Whole Genome v3.0 Assembly & Annotation	Rubus occidentalis
rcrchR135	Rosa chinensis Old Blush homozygous genome v2.0	Rosa chinensis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
RC0G0067400	gene:RC0G0067400	Rosa chinensis	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
mRNA:RC0G0067400	mRNA:RC0G0067400	Rosa chinensis	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
mRNA:RC0G0067400-exon-Chr00-1551288401:7744308..7744364	mRNA:RC0G0067400-exon-Chr00-1551288401:7744308..7744364	Rosa chinensis	exon
mRNA:RC0G0067400-exon-Chr00-1551288401:7745156..7745263	mRNA:RC0G0067400-exon-Chr00-1551288401:7745156..7745263	Rosa chinensis	exon
mRNA:RC0G0067400-exon-Chr00-1551288401:7745850..7745892	mRNA:RC0G0067400-exon-Chr00-1551288401:7745850..7745892	Rosa chinensis	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
mRNA:RC0G0067400-CDS-Chr00-1551288401:7744308..7744364	mRNA:RC0G0067400-CDS-Chr00-1551288401:7744308..7744364	Rosa chinensis	CDS
mRNA:RC0G0067400-CDS-Chr00-1551288401:7745156..7745263	mRNA:RC0G0067400-CDS-Chr00-1551288401:7745156..7745263	Rosa chinensis	CDS
mRNA:RC0G0067400-CDS-Chr00-1551288401:7745850..7745861	mRNA:RC0G0067400-CDS-Chr00-1551288401:7745850..7745861	Rosa chinensis	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
mRNA:RC0G0067400-five_prime_UTR-Chr00-1551288401:7745862..7745892	mRNA:RC0G0067400-five_prime_UTR-Chr00-1551288401:7745862..7745892	Rosa chinensis	five_prime_UTR

Homology

[Close]

BLAST of RC0G0067400 vs. TAIR10
Match: AT2G36850.1 (| Symbols: ATGSL08, GSL8, GSL08, ATGSL8, CHOR | glucan synthase-like 8 | chr2:15454935-15469666 REVERSE LENGTH=1904)

HSP 1 Score: 53.9138 bits (128), Expect = 1.991e-10
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 1

Query:    1 MFDHMAKELDA-------IPAAGCTIENDY--VSFLKQIVYPMHETLAAEAARNNNGKAAH 156
            +F +MAKELDA       + A  C    D   VSFL++I+ P++ET++AE  RNN GKAAH
Sbjct:  373 IFHNMAKELDAKLDHGEAVRADSCLTGTDTGSVSFLERIICPIYETISAETVRNNGGKAAH 433

[Close]

BLAST of RC0G0067400 vs. TAIR10
Match: AT3G07160.1 (| Symbols: ATGSL10, gsl10, CALS9 | glucan synthase-like 10 | chr3:2265142-2279383 REVERSE LENGTH=1890)

HSP 1 Score: 45.4394 bits (106), Expect = 2.117e-7
Identity = 23/64 (35.94%), Postives = 35/64 (54.69%), Query Frame = 1

Query:    1 MFDHMAKELDAI-------PAAGCTI-----ENDYVSFLKQIVYPMHETLAAEAARNNNGKAAH 156
            +F HM +E+D I       PA  C        +D VSFL  ++ P++  ++AEA  N+NG+A H
Sbjct:  361 IFHHMVREMDEILRQQVARPAESCMPVDSRGSDDGVSFLDHVIAPLYGVVSAEAFNNDNGRAPH 424

[Close]

BLAST of RC0G0067400 vs. ExPASy Swiss-Prot
Match: Callose synthase 10 OS=Arabidopsis thaliana GN=CALS10 PE=2 SV=5 (Callose synthase 10 OS=Arabidopsis thaliana GN=CALS10 PE=2 SV=5)

HSP 1 Score: 53.9138 bits (128), Expect = 2.738e-9
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 1

Query:    1 MFDHMAKELDA-------IPAAGCTIENDY--VSFLKQIVYPMHETLAAEAARNNNGKAAH 156
            +F +MAKELDA       + A  C    D   VSFL++I+ P++ET++AE  RNN GKAAH
Sbjct:  373 IFHNMAKELDAKLDHGEAVRADSCLTGTDTGSVSFLERIICPIYETISAETVRNNGGKAAH 433

[Close]

BLAST of RC0G0067400 vs. ExPASy TrEMBL
Match: M5WFR6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026168mg PE=4 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.421e-16
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 1

Query:    1 MFDHMAKELDAI-------PAAGCTIENDYVSFLKQIVYPMHETLAAEAARNNNGKAAHFS 162
            +F HMAKELDAI       PA+ C  E+  VSFL+QI++P++ETLAAEAARNNNGKAAH S
Sbjct:  377 IFHHMAKELDAILDHGEANPASSCRTESGSVSFLEQIIHPIYETLAAEAARNNNGKAAHSS 437

[Close]

BLAST of RC0G0067400 vs. ExPASy TrEMBL
Match: A0A061G5P3_THECC (Glucan synthase-like 8 isoform 3 OS=Theobroma cacao GN=TCM_014552 PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.808e-15
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1

Query:    1 MFDHMAKELDAI-------PAAGCTIENDYVSFLKQIVYPMHETLAAEAARNNNGKAAHFS 162
            +F HMAKELDAI       PA+ CT E  YVSFL+QI+ P+++T+AAEA RN NGKAAH S
Sbjct:  376 IFHHMAKELDAILDHGEANPASSCTAEGGYVSFLEQIICPIYDTMAAEAVRNGNGKAAHSS 436

[Close]

BLAST of RC0G0067400 vs. ExPASy TrEMBL
Match: A0A061FZP3_THECC (Glucan synthase-like 8 isoform 1 OS=Theobroma cacao GN=TCM_014552 PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.809e-15
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1

Query:    1 MFDHMAKELDAI-------PAAGCTIENDYVSFLKQIVYPMHETLAAEAARNNNGKAAHFS 162
            +F HMAKELDAI       PA+ CT E  YVSFL+QI+ P+++T+AAEA RN NGKAAH S
Sbjct:  376 IFHHMAKELDAILDHGEANPASSCTAEGGYVSFLEQIICPIYDTMAAEAVRNGNGKAAHSS 436

[Close]

BLAST of RC0G0067400 vs. ExPASy TrEMBL
Match: A0A061FZ71_THECC (Glucan synthase-like 8 isoform 2 OS=Theobroma cacao GN=TCM_014552 PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.809e-15
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1

Query:    1 MFDHMAKELDAI-------PAAGCTIENDYVSFLKQIVYPMHETLAAEAARNNNGKAAHFS 162
            +F HMAKELDAI       PA+ CT E  YVSFL+QI+ P+++T+AAEA RN NGKAAH S
Sbjct:  376 IFHHMAKELDAILDHGEANPASSCTAEGGYVSFLEQIICPIYDTMAAEAVRNGNGKAAHSS 436

[Close]

BLAST of RC0G0067400 vs. ExPASy TrEMBL
Match: A0A1U8G6W4_CAPAN (callose synthase 10 OS=Capsicum annuum GN=LOC107862644 PE=4 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.849e-15
Identity = 37/59 (62.71%), Postives = 44/59 (74.58%), Query Frame = 1

Query:    1 MFDHMAKELDAI-------PAAGCTIENDYVSFLKQIVYPMHETLAAEAARNNNGKAAH 156
            +F HMA+ELDAI       PA  C  EN  VSFL+QI+ P++ET+AAEAARNNNGKAAH
Sbjct:  376 IFHHMARELDAILDRGEASPAPSCIGENQSVSFLEQIICPIYETIAAEAARNNNGKAAH 434

[Close]

BLAST of RC0G0067400 vs. ExPASy TrEMBL
Match: A0A1S3YYD3_TOBAC (callose synthase 10-like OS=Nicotiana tabacum GN=LOC107780981 PE=4 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.792e-15
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 1

Query:    1 MFDHMAKELDAI-------PAAGCTIENDYVSFLKQIVYPMHETLAAEAARNNNGKAAH 156
            +F HMA+ELDAI       PAA C  EN  VSFL+QI+ P+++T+ AEAARNNNGKAAH
Sbjct:  376 IFHHMARELDAILDHGEASPAASCVGENQSVSFLEQIIRPIYDTIVAEAARNNNGKAAH 434

[Close]

BLAST of RC0G0067400 vs. ExPASy TrEMBL
Match: A0A1U7XG94_NICSY (callose synthase 10 OS=Nicotiana sylvestris GN=LOC104238439 PE=4 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.819e-15
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 1

Query:    1 MFDHMAKELDAI-------PAAGCTIENDYVSFLKQIVYPMHETLAAEAARNNNGKAAH 156
            +F HMA+ELDAI       PAA C  EN  VSFL+QI+ P+++T+ AEAARNNNGKAAH
Sbjct:  376 IFHHMARELDAILDHGEASPAASCVGENQSVSFLEQIIRPIYDTIVAEAARNNNGKAAH 434

[Close]

BLAST of RC0G0067400 vs. ExPASy TrEMBL
Match: A0A1J6IJ47_NICAT (Callose synthase 10 OS=Nicotiana attenuata GN=CALS10 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.033e-14
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 1

Query:    1 MFDHMAKELDAI-------PAAGCTIENDYVSFLKQIVYPMHETLAAEAARNNNGKAAH 156
            +F HMA+ELDAI       PA  C  EN  VSFL+QI+ P+++T+ AEAARNNNGKAAH
Sbjct:  376 IFHHMARELDAILDHGEASPATSCVGENQSVSFLEQIIRPIYDTIVAEAARNNNGKAAH 434

[Close]

BLAST of RC0G0067400 vs. ExPASy TrEMBL
Match: A0A200R4H0_9MAGN (Glycosyl transferase OS=Macleaya cordata GN=BVC80_1837g429 PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.086e-14
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1

Query:    1 MFDHMAKELDAI-------PAAGCTIENDYVSFLKQIVYPMHETLAAEAARNNNGKAAH 156
            +F +MAKELDAI       PA  CT +N  VS+L Q++ P++ET+AAEAARNNNGKAAH
Sbjct:  376 IFHNMAKELDAILDHGEAKPAVSCTRDNGSVSYLDQVICPIYETMAAEAARNNNGKAAH 434

[Close]

BLAST of RC0G0067400 vs. ExPASy TrEMBL
Match: A0A1U8HHC9_GOSHI (callose synthase 10-like OS=Gossypium hirsutum GN=LOC107886163 PE=4 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.078e-13
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1

Query:    1 MFDHMAKELDAI-------PAAGCTIENDYVSFLKQIVYPMHETLAAEAARNNNGKAAHFS 162
            +F HMA+ELD+I       PA  CT E+  VSFL+QI+ P++ T+A EAARNNNGKAAH S
Sbjct:  375 IFHHMARELDSIVDHGEANPARSCTTESGSVSFLEQIICPIYNTMAEEAARNNNGKAAHSS 435

[Close]

BLAST of RC0G0067400 vs. NCBI nr
Match: gi|470126429|ref|XP_004299187.1| (PREDICTED: callose synthase 10 [Fragaria vesca subsp. vesca])

HSP 1 Score: 83.9593 bits (206), Expect = 1.834e-17
Identity = 42/59 (71.19%), Postives = 46/59 (77.97%), Query Frame = 1

Query:    1 MFDHMAKELDAI-------PAAGCTIENDYVSFLKQIVYPMHETLAAEAARNNNGKAAH 156
            +F +MAKELDAI       PA  CTIEND VSFLKQIV P++ETLAAEA RNNNGKAAH
Sbjct:  372 IFHNMAKELDAILDHGDAIPAGSCTIENDSVSFLKQIVEPIYETLAAEADRNNNGKAAH 430

[Close]

BLAST of RC0G0067400 vs. NCBI nr
Match: gi|1039912726|ref|XP_017182330.1| (PREDICTED: callose synthase 10-like [Malus domestica])

HSP 1 Score: 80.1073 bits (196), Expect = 4.121e-17
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 1

Query:    1 MFDHMAKELDAI-------PAAGCTIENDYVSFLKQIVYPMHETLAAEAARNNNGKAAH 156
            +F HMAKELDAI       PAA C  E+  VSFL QI++P++ETLAAEAARNNNGKAAH
Sbjct:  102 IFHHMAKELDAILDHGEANPAASCRTESGSVSFLDQIIFPIYETLAAEAARNNNGKAAH 160

[Close]

BLAST of RC0G0067400 vs. NCBI nr
Match: gi|645268160|ref|XP_008239401.1| (PREDICTED: callose synthase 10 [Prunus mume])

HSP 1 Score: 81.2629 bits (199), Expect = 1.365e-16
Identity = 40/61 (65.57%), Postives = 47/61 (77.05%), Query Frame = 1

Query:    1 MFDHMAKELDAI-------PAAGCTIENDYVSFLKQIVYPMHETLAAEAARNNNGKAAHFS 162
            +F HMAKELDAI       PAA C  E+  VSFL+QI++P++ETLAAEAARNNNGKAAH S
Sbjct:  371 IFHHMAKELDAILDHGEANPAASCRTESGSVSFLEQIIHPIYETLAAEAARNNNGKAAHSS 431

[Close]

BLAST of RC0G0067400 vs. NCBI nr
Match: gi|1139773632|gb|ONI08104.1| (hypothetical protein PRUPE_5G158100 [Prunus persica])

HSP 1 Score: 80.1073 bits (196), Expect = 3.548e-16
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 1

Query:    1 MFDHMAKELDAI-------PAAGCTIENDYVSFLKQIVYPMHETLAAEAARNNNGKAAHFS 162
            +F HMAKELDAI       PA+ C  E+  VSFL+QI++P++ETLAAEAARNNNGKAAH S
Sbjct:  371 IFHHMAKELDAILDHGEANPASSCRTESGSVSFLEQIIHPIYETLAAEAARNNNGKAAHSS 431

[Close]

BLAST of RC0G0067400 vs. NCBI nr
Match: gi|1162560633|ref|XP_020420541.1| (callose synthase 10 [Prunus persica] >gi|1139773631|gb|ONI08103.1| hypothetical protein PRUPE_5G158100 [Prunus persica])

HSP 1 Score: 80.1073 bits (196), Expect = 3.548e-16
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 1

Query:    1 MFDHMAKELDAI-------PAAGCTIENDYVSFLKQIVYPMHETLAAEAARNNNGKAAHFS 162
            +F HMAKELDAI       PA+ C  E+  VSFL+QI++P++ETLAAEAARNNNGKAAH S
Sbjct:  371 IFHHMAKELDAILDHGEANPASSCRTESGSVSFLEQIIHPIYETLAAEAARNNNGKAAHSS 431

[Close]

BLAST of RC0G0067400 vs. NCBI nr
Match: gi|694410899|ref|XP_009333831.1| (PREDICTED: callose synthase 10-like [Pyrus x bretschneideri])

HSP 1 Score: 78.9518 bits (193), Expect = 9.683e-16
Identity = 39/59 (66.10%), Postives = 44/59 (74.58%), Query Frame = 1

Query:    1 MFDHMAKELDAI-------PAAGCTIENDYVSFLKQIVYPMHETLAAEAARNNNGKAAH 156
            +F HMAKELDAI       PAA C  E+  VSFL QI+ P++ETLAAEAARNNNGKAAH
Sbjct:  372 IFHHMAKELDAILDHGEANPAASCRTESGSVSFLDQIILPIYETLAAEAARNNNGKAAH 430

[Close]

BLAST of RC0G0067400 vs. NCBI nr
Match: gi|1063476719|ref|XP_007037863.2| (PREDICTED: callose synthase 10 isoform X2 [Theobroma cacao])

HSP 1 Score: 77.0258 bits (188), Expect = 4.098e-15
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1

Query:    1 MFDHMAKELDAI-------PAAGCTIENDYVSFLKQIVYPMHETLAAEAARNNNGKAAHFS 162
            +F HMAKELDAI       PA+ CT E  YVSFL+QI+ P+++T+AAEA RN NGKAAH S
Sbjct:  376 IFHHMAKELDAILDHGEANPASSCTAEGGYVSFLEQIICPIYDTMAAEAVRNGNGKAAHSS 436

[Close]

BLAST of RC0G0067400 vs. NCBI nr
Match: gi|508775108|gb|EOY22364.1| (Glucan synthase-like 8 isoform 3 [Theobroma cacao])

HSP 1 Score: 77.0258 bits (188), Expect = 4.098e-15
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1

Query:    1 MFDHMAKELDAI-------PAAGCTIENDYVSFLKQIVYPMHETLAAEAARNNNGKAAHFS 162
            +F HMAKELDAI       PA+ CT E  YVSFL+QI+ P+++T+AAEA RN NGKAAH S
Sbjct:  376 IFHHMAKELDAILDHGEANPASSCTAEGGYVSFLEQIICPIYDTMAAEAVRNGNGKAAHSS 436

[Close]

BLAST of RC0G0067400 vs. NCBI nr
Match: gi|1063476717|ref|XP_007037861.2| (PREDICTED: callose synthase 10 isoform X1 [Theobroma cacao])

HSP 1 Score: 77.0258 bits (188), Expect = 4.098e-15
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1

Query:    1 MFDHMAKELDAI-------PAAGCTIENDYVSFLKQIVYPMHETLAAEAARNNNGKAAHFS 162
            +F HMAKELDAI       PA+ CT E  YVSFL+QI+ P+++T+AAEA RN NGKAAH S
Sbjct:  376 IFHHMAKELDAILDHGEANPASSCTAEGGYVSFLEQIICPIYDTMAAEAVRNGNGKAAHSS 436

[Close]

BLAST of RC0G0067400 vs. NCBI nr
Match: gi|508775106|gb|EOY22362.1| (Glucan synthase-like 8 isoform 1 [Theobroma cacao])

HSP 1 Score: 77.0258 bits (188), Expect = 4.098e-15
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1

Query:    1 MFDHMAKELDAI-------PAAGCTIENDYVSFLKQIVYPMHETLAAEAARNNNGKAAHFS 162
            +F HMAKELDAI       PA+ CT E  YVSFL+QI+ P+++T+AAEA RN NGKAAH S
Sbjct:  376 IFHHMAKELDAILDHGEANPASSCTAEGGYVSFLEQIICPIYDTMAAEAVRNGNGKAAHSS 436

The following BLAST results are available for this feature:

BLAST of RC0G0067400 vs. TAIR10
BLAST of RC0G0067400 vs. ExPASy Swiss-Prot
BLAST of RC0G0067400 vs. ExPASy TrEMBL
BLAST of RC0G0067400 vs. NCBI nr

BLAST of RC0G0067400 vs. TAIR10
Analysis Date: 2018-02-22 (BLASTx of Rosa chinensis v1.0 transcripts vs TAIR10)
Total hits: 2


Match Name	E-value	Identity	Description
AT2G36850.1	1.991e-10	47.54	\| Symbols: ATGSL08, GSL8, GSL08, ATGSL8, CHOR \| gl...	[more]
AT3G07160.1	2.117e-7	35.94	\| Symbols: ATGSL10, gsl10, CALS9 \| glucan synthase...	[more]

BLAST of RC0G0067400 vs. ExPASy Swiss-Prot
Analysis Date: 2018-02-21 (BLASTx of Rosa chinensis v1.0 transcripts vs UniProt Swissprot)
Total hits: 1


Match Name	E-value	Identity	Description
Callose synthase 10 OS=Arabidopsis thaliana GN=CALS10 PE=2 SV=5	2.738e-9	47.54	Callose synthase 10 OS=Arabidopsis thaliana GN=CAL...	[more]

BLAST of RC0G0067400 vs. ExPASy TrEMBL
Analysis Date: 2018-02-27 (BLASTx of Rosa chinensis v1.0 transcripts vs UniProt TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
M5WFR6_PRUPE	2.421e-16	63.93	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
A0A061G5P3_THECC	2.808e-15	60.66	Glucan synthase-like 8 isoform 3 OS=Theobroma caca...	[more]
A0A061FZP3_THECC	2.809e-15	60.66	Glucan synthase-like 8 isoform 1 OS=Theobroma caca...	[more]
A0A061FZ71_THECC	2.809e-15	60.66	Glucan synthase-like 8 isoform 2 OS=Theobroma caca...	[more]
A0A1U8G6W4_CAPAN	4.849e-15	62.71	callose synthase 10 OS=Capsicum annuum GN=LOC10786...	[more]
A0A1S3YYD3_TOBAC	7.792e-15	61.02	callose synthase 10-like OS=Nicotiana tabacum GN=L...	[more]
A0A1U7XG94_NICSY	7.819e-15	61.02	callose synthase 10 OS=Nicotiana sylvestris GN=LOC...	[more]
A0A1J6IJ47_NICAT	3.033e-14	59.32	Callose synthase 10 OS=Nicotiana attenuata GN=CALS...	[more]
A0A200R4H0_9MAGN	7.086e-14	59.32	Glycosyl transferase OS=Macleaya cordata GN=BVC80_...	[more]
A0A1U8HHC9_GOSHI	1.078e-13	57.38	callose synthase 10-like OS=Gossypium hirsutum GN=...	[more]

BLAST of RC0G0067400 vs. NCBI nr
Analysis Date: 2018-02-28 (BLASTx of Rosa chinensis v1.0 transcripts vs NCBI nr)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|470126429\|ref\|XP_004299187.1\|	1.834e-17	71.19	PREDICTED: callose synthase 10 [Fragaria vesca sub...	[more]
gi\|1039912726\|ref\|XP_017182330.1\|	4.121e-17	66.10	PREDICTED: callose synthase 10-like [Malus domesti...	[more]
gi\|645268160\|ref\|XP_008239401.1\|	1.365e-16	65.57	PREDICTED: callose synthase 10 [Prunus mume]	[more]
gi\|1139773632\|gb\|ONI08104.1\|	3.548e-16	63.93	hypothetical protein PRUPE_5G158100 [Prunus persic...	[more]
gi\|1162560633\|ref\|XP_020420541.1\|	3.548e-16	63.93	callose synthase 10 [Prunus persica] >gi\|113977363...	[more]
gi\|694410899\|ref\|XP_009333831.1\|	9.683e-16	66.10	PREDICTED: callose synthase 10-like [Pyrus x brets...	[more]
gi\|1063476719\|ref\|XP_007037863.2\|	4.098e-15	60.66	PREDICTED: callose synthase 10 isoform X2 [Theobro...	[more]
gi\|508775108\|gb\|EOY22364.1\|	4.098e-15	60.66	Glucan synthase-like 8 isoform 3 [Theobroma cacao]	[more]
gi\|1063476717\|ref\|XP_007037861.2\|	4.098e-15	60.66	PREDICTED: callose synthase 10 isoform X1 [Theobro...	[more]
gi\|508775106\|gb\|EOY22362.1\|	4.098e-15	60.66	Glucan synthase-like 8 isoform 1 [Theobroma cacao]	[more]

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr00:7744308..7745892-
coding sequence from alignment at Chr00:7744308..7745892-

mRNA sequence

>mRNA:RC0G0067400 ID=mRNA:RC0G0067400; Name=RC0G0067400; organism=Rosa chinensis; type=mRNA; length=208bp
TGTCCACTTTCTTCCTGAATGCATTTGCTACATGTTTGACCATATGGCGA
AGGAGTTAGATGCTATTCCTGCTGCTGGCTGCACAATAGAAAATGATTAT
GTGTCCTTCCTCAAGCAGATTGTTTATCCTATGCATGAAACATTGGCAGC
GGAAGCTGCTAGAAACAATAATGGGAAAGCTGCGCATTTCAGCGTGGCGG
AATTATGA

protein sequence of mRNA:RC0G0067400

>mRNA:RC0G0067400 ID=mRNA:RC0G0067400; Name=mRNA:RC0G0067400; organism=Rosa chinensis; type=polypeptide; length=58bp
MFDHMAKELDAIPAAGCTIENDYVSFLKQIVYPMHETLAAEAARNNNGKA
AHFSVAEL

mRNA from alignment at Chr00:7744308..7745892-

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA:RC0G0067400 ID=mRNA:RC0G0067400; Name=RC0G0067400; organism=Rosa chinensis; type=mRNA; length=1585bp; location=Sequence derived from: Chr00:7744308..7745892- (Rosa chinensis
TGTCCACTTTCTTCCTGAATGCATTTGCTACATGTTTGACCATGTAAGGC
TCCAACATTTCTAGTTAACTTTGCTTGCAGTTTGATCTGTTCAGTTTTTT
CATAGTAGCTTTAAATATCTGGTTATTTATTTGTCTGCTAAATAGCCTCA
TTAACATTTTCTGTTATGGAGACTGAACTGAGCTAATTGCAAACGAGCTC
CTTGTAATTTTTGATTGTTCTACTATACTAACAAATGTCTGGGATCATAA
ATCCAACTTCATCACAAAATCATTTGTCTGCAACATTGAAGAAATTTAAA
TATAGGATTTTTGGTTTATATCCAAAGTAATTTTGCAAGTTATAGTGGAA
TGATCTTTGTACTGAAGATGGTACTCTTAGAAAACTCTATTTTGTCAATA
TTTAACAACATTTCGCTGTTGAGGATGATATCTACATGATTTGTTTAGAT
TTTTTACGGCAAGTGGGAAATTGCTGGATATGCATCATGATACCGTTGCT
TCTTTACTGTCAATTGTTTGTATTTTTTGATTGTGCGGAGACTTTTCTGA
GAGATATTAGCAGTACATTTATTCAAACTTTTCATATCATTACTCATGAG
ATTTAACATCATCACTTATGGTTCTGCAGATGGCGAAGGAGTTAGATGCT
ATTCCTGCTGCTGGCTGCACAATAGAAAATGATTATGTGTCCTTCCTCAA
GCAGATTGTTTATCCTATGCATGAAACATTGGCAGCGGTCTGTGCATCTC
CATTTGATTTTTAGTGATTGCACATTTTATGCATCTAGTTGTATTTTCTG
TCCAAGTATAAATTAAATGTTCAAGTGTGCCAACTTTCTTGGATGCCTTC
TCAGTGGTATTATTTGGTCTTTTACTTGTTTTTTTATATCTTGAACAAGA
TCACACTTCTCTGAAAAGGTGTGATAAAAGCTTACTAGATCTTGCTTTAT
TTATTTATAATTTTTTTATGGGTACGATTCTGGAGATCATAGTGGTGTCA
TTACATAAGATTCTACGACACCTTGGTTATCTTAAGTTGACTGGTCTGGA
TCTATATGAATTTATGGCTTCTTGATCAAATCAGCATGATTTTCATTTTC
ACCCAAAATAAATAAAAGAAAAGAAGAAACAAGAAAGTAAGTCTTACTTT
TTTAGGTTGCTCTTCAAGTCATTGAGGTAACAATTCAATATCTCAACTTC
TGTGGTCTTTTGCTGTTGAACATTGCTGGAAATATTAGGAGTGTCTATTT
GTGCGGTACTTATAGATTTGAAATGTTAAACGCATGGGTGGTATTTTCGG
CATTATGGTATCACTTATTATTGTTAAGTAGTCGCATAGTCTGGCTGATA
TATACTCCAATGTGGGAAAGGGAGTAACAGTGGTTGCTTTGTGGGCATTA
CTAATATGGTGACTTCTTTCTGATGCTTCTTTCATTTTTGATAAAGCTAT
CTTGTCACATAGTCTACCTGATGTGTACTCCATTTGATCTTGAGAATAAC
TTCTGCTTTGCTTTAACCTTGCATGTAGGAAGCTGCTAGAAACAATAATG
GGAAAGCTGCGCATTTCAGCGTGGCGGAATTATGA

Coding sequence (CDS) from alignment at Chr00:7744308..7745892-

>mRNA:RC0G0067400 ID=mRNA:RC0G0067400; Name=RC0G0067400; organism=Rosa chinensis; type=CDS; length=177bp; location=Sequence derived from: Chr00:7744308..7745892- (Rosa chinensis
ATGTTTGACCATATGGCGAAGGAGTTAGATGCTATTCCTGCTGCTGGCTG
CACAATAGAAAATGATTATGTGTCCTTCCTCAAGCAGATTGTTTATCCTA
TGCATGAAACATTGGCAGCGGAAGCTGCTAGAAACAATAATGGGAAAGCT
GCGCATTTCAGCGTGGCGGAATTATGA