SNP_IGA_158089, SNP_IGA_158089 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_158089
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_158089
IRSC 16K SNP array for peach:SNP_IGA_158089
TypeSNP
SNP Alleles[A/C]
SpeciesPrunus persica
Primer 1SNP_IGA_158089_LEFT_primer_0: TCAGTAATGGTGCAGCTGAGTT
Primer 2SNP_IGA_158089_RIGHT_primer_0: GTGTGATGGTGAAATACATGGG
Product Length128
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1peach-ZC-F22_1N/A4.12SNP_IGA_158089View
2Peach-PF-BC1-2017LG2N/A11.2SNP_IGA_158089View
3Peach-ZC-F2-20182N/A2.35SNP_IGA_158089View
Sequence
>SNP_IGA_158089 ID=SNP_IGA_158089; Name=SNP_IGA_158089; organism=Prunus persica; type=genetic_marker; length=121bp
TGGTGCAGCTGAGTTAGCCTATCAAGCGACGGTGAAAATTAGCGGGCATG
TATTCCAGGGKTTGCTTTATGATCACGGGGTTGATAAGGACAATGCATTC
CCATGTATTTCACCATCACAC
Alignments
Feature NameTypeLocationAnalysis
scaffold_2 supercontig scaffold_2:2199209..2199209. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp02 chromosome Pp02:3945235..3945235. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)