SNP_IGA_230835, SNP_IGA_230835 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_230835
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_230835
IRSC 16K SNP array for peach:SNP_IGA_230835
TypeSNP
SNP Alleles[T/C]
SpeciesPrunus persica
Primer 1SNP_IGA_230835_LEFT_primer_0: AAAGGTGACAGGGGTAGTGAAA
Primer 2SNP_IGA_230835_RIGHT_primer_0: GAACACGAGGGACAAAAATAGC
Product Length146
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach-OC-F22N/A0SNP_IGA_230835View
2peach-ZC-F22_1N/A2.08SNP_IGA_230835View
3Peach-PF-Recurrent-2017LG2AN/A0.4SNP_IGA_230835View
4Peach-ZC-F2-20182N/A0SNP_IGA_230835View
5Peach_Consensus_map_20182N/A0SNP_IGA_230835View
6Prunus-TE-F2-20152N/A1SA230835View
Sequence
>SNP_IGA_230835 ID=SNP_IGA_230835; Name=SNP_IGA_230835; organism=Prunus persica; type=genetic_marker; length=121bp
GCAGCGTTATGTGTATGGAACCTTACTGGACAGCATTGCAAAGGTGACAG
GGGTAGTGAARTTTGATCTGCATGCTGCACCAGAGCTTGGAAAAACAAAA
ATTGAGGTTGGAGGAAACGTC
Alignments
Feature NameTypeLocationAnalysis
scaffold_2 supercontig scaffold_2:9314652..9314652. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp02 chromosome Pp02:1305085..1305085. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)