SNP_IGA_35027, SNP_IGA_35027 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_35027
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_35027
IRSC 16K SNP array for peach:SNP_IGA_35027
TypeSNP
SNP Alleles[T/C]
SpeciesPrunus persica
Primer 1SNP_IGA_35027_LEFT_primer_0: GGGAAAATTTGGAGTCATTGTC
Primer 2SNP_IGA_35027_RIGHT_primer_0: ATTTCCTCGTCTTCCTCATCAA
Product Length289
Publication[view all]
ContactPere Arus
Ksenija Gasic
Contact
NameDetails
Pere Arus
First name:Pere
Last name:Arus
Title:Researcher
Institution:IRTA
Address:IRTA, Centre de Recerca en Agrigeno`mica CSIC-IRTA-UAB-UB; Campus UAB, Bellaterra (Cerdanyola del Valle`s), 08193 Barcelona, Spain
Country:Spain
Email:pere.arus@irta.cat
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Prunus-TE-F2-20151N/A19.2SA35027View
2Prunus-TE-BC1-T1EG1_T1EN/A15.4SA35027View
3Prunus-TE-BC1-EG1_EN/A41.7SA35027View
4Peach-PF-BC1-2017LG1N/A34.9SNP_IGA_35027View
Sequence
>SNP_IGA_35027 ID=SNP_IGA_35027; Name=SNP_IGA_35027; organism=Prunus persica; type=genetic_marker; length=121bp
GCCTTCACTGCAAGAACTTTCGTCGTTTAGATATACATGGTGCTTCAGTA
GGTGAAGATGYGGCGTTGTCGATCGTCAAATTGGTGCCTAATATTGAGCA
CTTAAGCTTGAGAGGGGCAAG
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:12098536..12098536. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:12546767..12546767. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)