SNP_IGA_598071, SNP_IGA_598071 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_598071
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_598071
IRSC 16K SNP array for peach:SNP_IGA_598071
3K SeqSNP for peach:SNP_IGA_598071
TypeSNP
SNP Alleles[A/G]
SpeciesPrunus persica
Primer 1SNP_IGA_598071_LEFT_primer_0: TATCCAAAAAGCATGAGGGAGT
Primer 2SNP_IGA_598071_RIGHT_primer_0: CATTTGGAGATGGTGGCTTATT
Product Length148
ContactKsenija Gasic
Associated WithGWAS0001471
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
3K SeqSNP for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach-WB-F2-2015LG5N/A49.96SNP_IGA_598071View
Sequence
>SNP_IGA_598071 ID=SNP_IGA_598071; Name=SNP_IGA_598071; organism=Prunus persica; type=genetic_marker; length=121bp
AAAAAGCATGAGGGAGTTGGTGAAGGAGAGGCTGCCTGAGTTTACTGAAG
AAGAGAAAGTRATGGTTAAGGGAAGTTTAGATTTTCTTGCGATGAATTAT
TACGCATCAAGTTATGCTAAA
Annotated Terms
The following terms have been associated with this genetic_marker:
Vocabulary: Rosaceae Trait Ontology
TermDefinition
MAIN:rosaceae_trait_ontology:resistance to Monilinia fructicolaresistance to Monilinia fructicola