SNP_IGA_69306, SNP_IGA_69306 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_69306
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_69306
IRSC 16K SNP array for peach:SNP_IGA_69306
TypeSNP
SNP Alleles[A/G]
SpeciesPrunus persica
Primer 1SNP_IGA_69306_LEFT_primer_0: AACTTGGAACCATGTCCATTTC
Primer 2SNP_IGA_69306_RIGHT_primer_0: CATCAAATATTCCGCATACCCT
Product Length275
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach-VV-F2G1N/A42.9SNP_IGA_69306View
2Peach-WB-F2-2015LG1N/A43.38SNP_IGA_69306View
3Peach-BN-F1LG1_BbN/A30.7SNP_IGA_69306View
4Peach-WB-F2LG1N/A39.4SNP_IGA_69306View
5Peach_Consensus_map_20181N/A41.94SNP_IGA_69306View
Sequence
>SNP_IGA_69306 ID=SNP_IGA_69306; Name=SNP_IGA_69306; organism=Prunus persica; type=genetic_marker; length=121bp
AGTTGAGGAAACAATTTCAGATATCTTAGAAAAACAAGAAATTATGTGGA
GACAACGATCYAGAGTAGCATGGCTTAAGGAGGGAGATGAAAATACTCAT
TTTTTCCATGGGAGGGCAAGT
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:19691547..19691547. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:20665616..20665616. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)