RosBREED_snp_sweet_cherry_Pp5_13715106, RosBREED_snp_sweet_cherry_Pp5_13715106 (genetic_marker) Prunus avium

Marker Overview

Name

RosBREED_snp_sweet_cherry_Pp5_13715106

dbSNP ID

ss490554495

SNP Array ID

IRSC 6K SNP array for cherry:

RosBREED_snp_sweet_cherry_Pp5_13715106

Type

SNP

SNP Alleles

T/C

Species

Prunus avium

Publication

[view all]

Libraries


Library Name	Type
IRSC 6K SNP array for cherry	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
scaffold_5	supercontig	scaffold_5:13715106..13715106 .	Prunus persica Whole Genome v1.0 Assembly & Annotation	n/a
Pp05	chromosome	Pp05:13709877..13709877 .	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a1	2016-11-21

Publications


Year	Publication
2012	Peace C, Bassil N, Main D, Ficklin S, Rosyara UR, Stegmeir T, Sebolt A, Gilmore B, Lawley C, Mockler TC, Bryant DW, Wilhelm L, Iezzoni A. Development and evaluation of a genome-wide 6K SNP array for diploid sweet cherry and tetraploid sour cherry. PloS one. 2012; 7(12):e48305.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Sweet Cherry-RL-F1-2015	L5	N/A	42.01	Rsweet_5_13715106	View
2	Prunus-TE-6K cherry SNP-estimate	5	N/A	31.53	RosBREED_snp_sweet_cherry_Pp5_13715106	View
3	sweet cherry-consensus-map-2012-6K cherry SNP-estimate	5	N/A	57.79	RosBREED_snp_sweet_cherry_Pp5_13715106	View
4	Sweet Cherry-VxC-F1	LG5	N/A	57.1	RosBREED_snp_sweet_cherry_Pp5_13715106	View
5	Sweet Cherry-CxC-F2	LG5	N/A	54.47	RosBREED_snp_sweet_cherry_Pp5_13715106	View
6	Sweet Cherry-BCxBC-F2	LG5	N/A	52.87	RosBREED_snp_sweet_cherry_Pp5_13715106	View
7	Sweet Cherry-RosBREED-3.8K-2020	5	N/A	42.05	RosBREED_snp_sweet_cherry_Pp5_13715106	View
8	Sweet Cherry-RosBREED-1.6K-2019	5	N/A	42.05	RosBREED_snp_sweet_cherry_Pp5_13715106	View
9	Sweet Cherry-AxS-F1	5	N/A	53.8	RosBREED_snp_sweet_cherry_Pp5_13715106	View
10	Sweet Cherry-VxC-F1-6+9K_array	5	N/A	56.8	RosBREED_snp_sweet_cherry_Pp5_13715106	View
11	Sweet_Cherry-Crump-panel-2022	5	N/A	42.05	RosBREED_snp_sweet_cherry_Pp5_13715106	View
12	Sour Cherry-M172x25-F1	LG5	N/A	42.05	RosBREED_snp_sweet_cherry_Pp5_13715106	View
13	SourCherry-Montx25-F1	LG5	N/A	42.05	RosBREED_snp_sweet_cherry_Pp5_13715106	View
14	SourCherry-25x25-F1	LG5	N/A	42.05	RosBREED_snp_sweet_cherry_Pp5_13715106	View
15	Sour Cherry-US-F1	LG5	N/A	42.05	RosBREED_snp_sweet_cherry_Pp5_13715106	View
16	SourCherry-RE-F1	LG5	N/A	42.05	RosBREED_snp_sweet_cherry_Pp5_13715106	View
17	SweetCherry-FX-F1-X	X5	N/A	46.62	RosBREED_snp_sweet_cherry_Pp5_13715106	View
18	Sweet Cherry-BTK-Kordia-2013	LG05	N/A	36.6	ss490554495	View
19	Sweet Cherry-RL-Lapins-2013	LG05	N/A	41.6	ss490554495	View
20	Sweet Cherry-BTK-F1-2013	LG05	N/A	43.2	ss490554495	View
21	Sweet Cherry-RL-F1-2013	LG05	N/A	42	ss490554495	View