RosBREED_snp_tart_cherry_f_Pp1_13763404, RosBREED_snp_tart_cherry_f_Pp1_13763404 (genetic_marker) Prunus cerasus

Marker Overview

Name

RosBREED_snp_tart_cherry_f_Pp1_13763404

dbSNP ID

ss490546116

SNP Array ID

IRSC 6K SNP array for cherry:

RosBREED_snp_tart_cherry_f_Pp1_13763404

Type

SNP

SNP Alleles

T/G

Species

Prunus cerasus

Libraries


Library Name	Type
IRSC 6K SNP array for cherry	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
scaffold_1	supercontig	scaffold_1:13763404..13763404 .	Prunus persica Whole Genome v1.0 Assembly & Annotation	n/a
Pp01	chromosome	Pp01:14737708..14737708 .	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)	n/a
PAV_r1.0chr1	chromosome	PAV_r1.0chr1:12104229..12104229 .	Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a1	2016-11-21

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Prunus-TE-6K cherry SNP-estimate	1	N/A	24.48	RosBREED_snp_tart_cherry_f_Pp1_13763404	View
2	sweet cherry-consensus-map-2012-6K cherry SNP-estimate	1	N/A	66.73	RosBREED_snp_tart_cherry_f_Pp1_13763404	View
3	Sour Cherry-M172x25-F1	LG1	N/A	43.97	RosBREED_snp_tart_cherry_f_Pp1_13763404	View
4	SourCherry-Montx25-F1	LG1	N/A	43.97	RosBREED_snp_tart_cherry_f_Pp1_13763404	View
5	SourCherry-25x25-F1	LG1	N/A	43.97	RosBREED_snp_tart_cherry_f_Pp1_13763404	View
6	Sour Cherry-US-F1	LG1	N/A	43.97	RosBREED_snp_tart_cherry_f_Pp1_13763404	View
7	SourCherry-RE-F1	LG1	N/A	43.97	RosBREED_snp_tart_cherry_f_Pp1_13763404	View

Sequence

>RosBREED_snp_tart_cherry_f_Pp1_13763404 ID=RosBREED_snp_tart_cherry_f_Pp1_13763404; Name=RosBREED_snp_tart_cherry_f_Pp1_13763404; organism=Prunus cerasus; type=genetic_marker; length=207bp
ATGCTAAATTCAGGTCATATGTACATTGCTTTGGTTTTAAGTAGACCTTG
CTCATGCTACCAAACAACTCATGCTCTTAACTAACATTATCATTGTTGAA
G[T/G]GGTTTCTGAACAACTAAATGAAGCCCTCAAAACAGTGGGAGATA
TTGAAATCAATGTTTTATTAATGGTTATAACTGAGGGTGTGAATGTATTC
AAATAAC