RosBREEDSNP_SNP_AG_9904632_Lg11_RosCOS3333_MAF40_MDP0000278972_exon2, RosBREEDSNP_SNP_AG_9904632_Lg11_RosCOS3333_MAF40_MDP0000278972_exon2 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_AG_9904632_Lg11_RosCOS3333_MAF40_MDP0000278972_exon2

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_AG_9904632_Lg11_RosCOS3333_MAF40_MDP0000278972_exon2
50K SNP array for apple:	AX-105207289

Type

SNP

SNP Alleles

A/G

5' Flanking Sequence

GGGTTCATCGCGACCTGGTTCTTGGCCGCATCGCC

3' Flanking Sequence

ATCAAACTTTCGGTGTCGGTAAAAGCCACAACAG

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC007631.311	contig	MDC007631.311:8281..8281 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr09	chromosome	Chr09:13922509..13922509 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a
Chr09	chromosome	Chr09:13922502..13922502 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2013	Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-M432-2013	5	N/A	35	RosBREEDSNP_SNP_AG_9904632_Lg11_RosCOS3333_MAF40_MDP0000278972_exon2	View
2	Apple-M432-2013-physical-Malus-domestica	11	N/A	9904632	RosBREEDSNP_SNP_AG_9904632_Lg11_RosCOS3333_MAF40_MDP0000278972_exon2	View

Sequence

>RosBREEDSNP_SNP_AG_9904632_Lg11_RosCOS3333_MAF40_MDP0000278972_exon2 ID=RosBREEDSNP_SNP_AG_9904632_Lg11_RosCOS3333_MAF40_MDP0000278972_exon2; Name=RosBREEDSNP_SNP_AG_9904632_Lg11_RosCOS3333_MAF40_MDP0000278972_exon2; organism=Malus x domestica; type=genetic_marker; length=70bp
GGGTTCATCGCGACCTGGTTCTTGGCCGCATCGCCRATCAAACTTTCGGT
GTCGGTAAAAGCCACAACAG