RosBREEDSNP_SNP_AG_5218379_Lg5_00544_MAF50_MDP0000933747_exon2, RosBREEDSNP_SNP_AG_5218379_Lg5_00544_MAF50_MDP0000933747_exon2 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_AG_5218379_Lg5_00544_MAF50_MDP0000933747_exon2

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_AG_5218379_Lg5_00544_MAF50_MDP0000933747_exon2
50K SNP array for apple:	AX-105183896

Type

SNP

SNP Alleles

A/G

5' Flanking Sequence

CAACAAATTGGAAAACATTCAAGCAGAGACATGAA

3' Flanking Sequence

AAGGCATACATATTTCCAGCCAAGAATCTGTCCG

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC020027.166	contig	MDC020027.166:2066..2066 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr05	chromosome	Chr05:44151497..44151497 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a
Chr05	chromosome	Chr05:44151495..44151495 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple_HCGA_F1	5	N/A	62.56	SNP_AG_5218379_Lg5_00544_MAF50_MDP0000933747_exon2	View
2	Apple_HC64_F1	5	N/A	5.46	SNP_AG_5218379_Lg5_00544_MAF50_MDP0000933747_exon2	View
3	Apple_HCMO_F1	5	N/A	11.58	SNP_AG_5218379_Lg5_00544_MAF50_MDP0000933747_exon2	View
4	Apple_HGMM_Consenus	5	N/A	23.9	SNP_AG_5218379_Lg5_00544_MAF50_MDP0000933747_exon2	View
5	Apple-RosBREED-3.9K-2019	5	N/A	73.91	SNP_AG_5218379_Lg5_00544_MAF50_MDP0000933747_exon2	View
6	Apple-Honeycrisp_Consensus-F1	5	N/A	7	RosBREEDSNP_SNP_AG_5218379_Lg5_00544_MAF50_MDP0000933747_exon2	View

Sequence

>RosBREEDSNP_SNP_AG_5218379_Lg5_00544_MAF50_MDP0000933747_exon2 ID=RosBREEDSNP_SNP_AG_5218379_Lg5_00544_MAF50_MDP0000933747_exon2; Name=RosBREEDSNP_SNP_AG_5218379_Lg5_00544_MAF50_MDP0000933747_exon2; organism=Malus x domestica; type=genetic_marker; length=70bp
CAACAAATTGGAAAACATTCAAGCAGAGACATGAARAAGGCATACATATT
TCCAGCCAAGAATCTGTCCG