RosBREEDSNP_SNP_AC_994373_Lg3_00506_MAF40_MDP0000137429_exon1, RosBREEDSNP_SNP_AC_994373_Lg3_00506_MAF40_MDP0000137429_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_AC_994373_Lg3_00506_MAF40_MDP0000137429_exon1

dbSNP ID

SNP Array ID

480K SNP array for apple:	AX-105189410
IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_AC_994373_Lg3_00506_MAF40_MDP0000137429_exon1
50K SNP array for apple:	AX-105189410

Type

SNP

SNP Alleles

5' Flanking Sequence

GATATCAATCTTGGTCTCGCCGTAGGAGAAGACGA

3' Flanking Sequence

AGGGAACGAGACGCCTCTTTTGGCCTCCATCATC

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
480K SNP array for apple	SNP_chip
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2012	Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203.
2016	Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple_HCGA_F1	3	N/A	13.54	SNP_AC_994373_Lg3_00506_MAF40_MDP0000137429_exon1	View
2	Apple_HC64_F1	3	N/A	0	SNP_AC_994373_Lg3_00506_MAF40_MDP0000137429_exon1	View
3	Apple_HCMO_F1	3	N/A	0	SNP_AC_994373_Lg3_00506_MAF40_MDP0000137429_exon1	View
4	Apple_HGMM_Consenus	3	N/A	0	SNP_AC_994373_Lg3_00506_MAF40_MDP0000137429_exon1	View
5	Apple-MM-F1	3	N/A	5.1	a475877474	View
6	Apple-Honeycrisp_Consensus-F1	3	N/A	0.68	RosBREEDSNP_SNP_AC_994373_Lg3_00506_MAF40_MDP0000137429_exon1	View
7	Pear-PH-CG-2017	LG14	N/A	4.68	RosBREEDSNP_SNP_AC_994373_Lg3_00506_MAF40_MDP0000137429_exon1	View

Sequence

>RosBREEDSNP_SNP_AC_994373_Lg3_00506_MAF40_MDP0000137429_exon1 ID=RosBREEDSNP_SNP_AC_994373_Lg3_00506_MAF40_MDP0000137429_exon1; Name=RosBREEDSNP_SNP_AC_994373_Lg3_00506_MAF40_MDP0000137429_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
GATATCAATCTTGGTCTCGCCGTAGGAGAAGACGA[A/C]AGGGAACGAG
ACGCCTCTTTTGGCCTCCATCATCT

Alignments

Feature Name	Type	Location	Analysis
MDC005627.323	contig	MDC005627.323:5498..5498.	Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr03	chromosome	Chr03:437049..437049+	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation