RosBREEDSNP_SNP_TC_20557590_Lg11_01187_MAF30_MDP0000647595_exon1, RosBREEDSNP_SNP_TC_20557590_Lg11_01187_MAF30_MDP0000647595_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_TC_20557590_Lg11_01187_MAF30_MDP0000647595_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_TC_20557590_Lg11_01187_MAF30_MDP0000647595_exon1
50K SNP array for apple:	AX-105192311

Type

SNP

SNP Alleles

T/C

5' Flanking Sequence

CGATAAGCACCAATGGCATATCAATCATCACCAAC

3' Flanking Sequence

TGTTCTCAATGGCTTGAAGGGAAGGGGCGGAGTG

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC006377.327	contig	MDC006377.327:1026..1026 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2013	Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple_HCGA_F1	14	N/A	0	SNP_TC_20557590_Lg11_01187_MAF30_MDP0000647595_exon1	View
2	Apple_HGMM_Consenus	14	N/A	0	SNP_TC_20557590_Lg11_01187_MAF30_MDP0000647595_exon1	View
3	Apple-M432-2013	14	N/A	9.46	SNP_TC_20557590_Lg11_01187_MAF30_MDP0000647595_exon1	View
4	Apple-M432-2013-physical-Malus-domestica	11	N/A	20557590	SNP_TC_20557590_Lg11_01187_MAF30_MDP0000647595_exon1	View

Sequence

>RosBREEDSNP_SNP_TC_20557590_Lg11_01187_MAF30_MDP0000647595_exon1 ID=RosBREEDSNP_SNP_TC_20557590_Lg11_01187_MAF30_MDP0000647595_exon1; Name=RosBREEDSNP_SNP_TC_20557590_Lg11_01187_MAF30_MDP0000647595_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
CGATAAGCACCAATGGCATATCAATCATCACCAACYTGTTCTCAATGGCT
TGAAGGGAAGGGGCGGAGTG