RosBREEDSNP_SNP_CA_19372011_Lg15_01518_MAF50_1624083_exon4, RosBREEDSNP_SNP_CA_19372011_Lg15_01518_MAF50_1624083_exon4 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_CA_19372011_Lg15_01518_MAF50_1624083_exon4

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_CA_19372011_Lg15_01518_MAF50_1624083_exon4
50K SNP array for apple:	AX-105174690

Type

SNP

SNP Alleles

A/C

5' Flanking Sequence

CTAAGCGGTAGATTAGTCCGCGAGCGGATTGGCCC

3' Flanking Sequence

GCCATGTTAAGTGCAGTGCAAAGTCAGGTAATTTC

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Sequence

>RosBREEDSNP_SNP_CA_19372011_Lg15_01518_MAF50_1624083_exon4 ID=RosBREEDSNP_SNP_CA_19372011_Lg15_01518_MAF50_1624083_exon4; Name=RosBREEDSNP_SNP_CA_19372011_Lg15_01518_MAF50_1624083_exon4; organism=Malus x domestica; type=genetic_marker; length=71bp
CTAAGCGGTAGATTAGTCCGCGAGCGGATTGGCCCMGCCATGTTAAGTGC
AGTGCAAAGTCAGGTAATTTC

Alignments

Feature Name	Type	Location	Analysis
MDC010224.340	contig	MDC010224.340:22737..22737.	Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr02	chromosome	Chr02:10090418..10090418.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr15	chromosome	Chr15:19566439..19566439.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation