RosBREEDSNP_SNP_TC_16628559_Lg1_02538_MAF40_MDP0000495165_exon1, RosBREEDSNP_SNP_TC_16628559_Lg1_02538_MAF40_MDP0000495165_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_TC_16628559_Lg1_02538_MAF40_MDP0000495165_exon1
Aliasss475876768
rs267609715
c475876768
SNP_TC_16628559_Lg1_02538_MAF40_MDP0000495165_exon1
AX-105183201
dbSNP IDss475876768
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_TC_16628559_Lg1_02538_MAF40_MDP0000495165_exon1
50K SNP array for apple:RosBREEDSNP_SNP_TC_16628559_Lg1_02538_MAF40_MDP0000495165_exon1
TypeSNP
SNP AllelesT/C
5' Flanking SequenceGGGAACCAGAGGTTGAGATGCGCCAACATTATCCC
3' Flanking SequenceATCTATTTGACTTAGGTGCGTTAAGTTTAAGGGA
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_TC_16628559_Lg1_02538_MAF40_MDP0000495165_exon1RosBREEDSNP_SNP_TC_16628559_Lg1_02538_MAF40_MDP0000495165_exon1Malus x domesticamarker_locus
RosBREEDSNP_SNP_TC_16628559_Lg1_02538_MAF40_MDP0000495165_exon1RosBREEDSNP_SNP_TC_16628559_Lg1_02538_MAF40_MDP0000495165_exon1-39.93Malus x domesticamarker_locus
RosBREED_SNP_TC_16628559_Lg1_02538_MAF40_MDP0000495165_exon1RosBREED_SNP_TC_16628559_Lg1_02538_MAF40_MDP0000495165_exon1Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_TC_16628559_Lg1_02538_MAF40_MDP0000495165_exon1 ID=RosBREEDSNP_SNP_TC_16628559_Lg1_02538_MAF40_MDP0000495165_exon1|Name=RosBREEDSNP_SNP_TC_16628559_Lg1_02538_MAF40_MDP0000495165_exon1|organism=Malus x domestica|type=genetic_marker|length=70bp
GGGAACCAGAGGTTGAGATGCGCCAACATTATCCCYATCTATTTGACTTA
GGTGCGTTAAGTTTAAGGGA
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20138N/A51.43RosBREEDSNP_SNP_TC_16628559_Lg1_02538_MAF40_MDP0000495165_exon1View
2Apple-M432-2013-physical-Malus-domestica1N/A16628559RosBREEDSNP_SNP_TC_16628559_Lg1_02538_MAF40_MDP0000495165_exon1View
3Pear-PH-CG-2017LG4N/A39.93RosBREEDSNP_SNP_TC_16628559_Lg1_02538_MAF40_MDP0000495165_exon1View
4Pear-PM-F1-PEAR34N/A15.23RosBREED_SNP_TC_16628559_Lg1_02538_MAF40_MDP0000495165_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC000646.239 contig MDC000646.239:403..403. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr01 chromosome Chr01:20981064..20981064. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr01 chromosome Chr01:20981063..20981063. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation