RosBREEDSNP_SNP_AG_27159165_Lg14_01473_MAF50_1646914_exon1, RosBREEDSNP_SNP_AG_27159165_Lg14_01473_MAF50_1646914_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_AG_27159165_Lg14_01473_MAF50_1646914_exon1

dbSNP ID

SNP Array ID

480K SNP array for apple:	AX-115181821
IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_AG_27159165_Lg14_01473_MAF50_1646914_exon1

Type

SNP

SNP Alleles

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
480K SNP array for apple	SNP_chip
IRSC 9K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC015229.223	contig	MDC015229.223:10890..10890 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr14	chromosome	Chr14:26001040..26001040 +	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2012	Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203.
2016	Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-MM-F1	14	N/A	34.5	a475881144	View
2	Apple-Honeycrisp_Consensus-F1	14	N/A	47.51	RosBREEDSNP_SNP_AG_27159165_Lg14_01473_MAF50_1646914_exon1	View

Sequence

>RosBREEDSNP_SNP_AG_27159165_Lg14_01473_MAF50_1646914_exon1 ID=RosBREEDSNP_SNP_AG_27159165_Lg14_01473_MAF50_1646914_exon1; Name=RosBREEDSNP_SNP_AG_27159165_Lg14_01473_MAF50_1646914_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
TGCTTCTCCTAATTCTTCCTCCCTCTTCCTCTTTG[A/G]CAGAGACAAG
GAAGATATGGTTTTGGCCGACACCA