RosBREEDSNP_SNP_CT_24804248_Lg17_00341_MAF40_1654737_exon1, RosBREEDSNP_SNP_CT_24804248_Lg17_00341_MAF40_1654737_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_CT_24804248_Lg17_00341_MAF40_1654737_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_CT_24804248_Lg17_00341_MAF40_1654737_exon1
50K SNP array for apple:	AX-105190779

Type

SNP

SNP Alleles

T/C

5' Flanking Sequence

AGATTAACAAGCGAAAGGCATGATAATCACTCGTT

3' Flanking Sequence

AAAATTGACCAAAGTACAGTGTGAGTTCGACTTG

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC008440.241	contig	MDC008440.241:3444..3444 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2013	Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
2012	Chagné D, Crowhurst RN, Troggio M, Davey MW, Gilmore B, Lawley C, Vanderzande S, Hellens RP, Kumar S, Cestaro A, Velasco R, Main D, Rees JD, Iezzoni A, Mockler T, Wilhelm L, Van de Weg E, Gardiner SE, Bassil N, Peace C. Genome-wide SNP detection, validation, and development of an 8K SNP array for apple. PloS one. 2012; 7(2):e31745.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-PM-F1-Moonglow	17	N/A	67.18	RosBREED_SNP_CT_24804248_Lg17_00341_MAF40_1654737_exon1	View
2	Apple-M432-2013	17	N/A	55.84	RosBREEDSNP_SNP_CT_24804248_Lg17_00341_MAF40_1654737_exon1	View
3	Apple-M432-2013-physical-Malus-domestica	17	N/A	24804248	RosBREEDSNP_SNP_CT_24804248_Lg17_00341_MAF40_1654737_exon1	View
4	Pear-PH-CG-2017	LG17	N/A	170.82	RosBREEDSNP_SNP_CT_24804248_Lg17_00341_MAF40_1654737_exon1	View

Sequence

>RosBREEDSNP_SNP_CT_24804248_Lg17_00341_MAF40_1654737_exon1 ID=RosBREEDSNP_SNP_CT_24804248_Lg17_00341_MAF40_1654737_exon1; Name=RosBREEDSNP_SNP_CT_24804248_Lg17_00341_MAF40_1654737_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
AGATTAACAAGCGAAAGGCATGATAATCACTCGTTYAAAATTGACCAAAG
TACAGTGTGAGTTCGACTTG