RosBREEDSNP_SNP_AC_25884621_Lg5_MDP0000155074_MAF10_MDP0000155074_exon8, RosBREEDSNP_SNP_AC_25884621_Lg5_MDP0000155074_MAF10_MDP0000155074_exon8 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_AC_25884621_Lg5_MDP0000155074_MAF10_MDP0000155074_exon8

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_AC_25884621_Lg5_MDP0000155074_MAF10_MDP0000155074_exon8
50K SNP array for apple:	AX-105185532

Type

SNP

SNP Alleles

A/C

5' Flanking Sequence

TTTAGGAATTTATGGCCGTAAACCCTAAACCCTAC

3' Flanking Sequence

TGCCGTAAACCCTAAACCACATACTGTAAATTGG

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC011595.216	contig	MDC011595.216:15546..15546 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr05	chromosome	Chr05:23980269..23980269 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2013	Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-M432-2013	5	N/A	53.3	RosBREEDSNP_SNP_AC_25884621_Lg5_MDP0000155074_MAF10_MDP0000155074_exon8	View
2	Apple-M432-2013-physical-Malus-domestica	5	N/A	25884621	RosBREEDSNP_SNP_AC_25884621_Lg5_MDP0000155074_MAF10_MDP0000155074_exon8	View

Sequence

>RosBREEDSNP_SNP_AC_25884621_Lg5_MDP0000155074_MAF10_MDP0000155074_exon8 ID=RosBREEDSNP_SNP_AC_25884621_Lg5_MDP0000155074_MAF10_MDP0000155074_exon8; Name=RosBREEDSNP_SNP_AC_25884621_Lg5_MDP0000155074_MAF10_MDP0000155074_exon8; organism=Malus x domestica; type=genetic_marker; length=70bp
TTTAGGAATTTATGGCCGTAAACCCTAAACCCTACMTGCCGTAAACCCTA
AACCACATACTGTAAATTGG