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Marker Overview
Name | Rub_AX-566097427 |
dbSNP ID | N/A |
SNP Array ID | 13K SNP Array for Rubus: | Affx-1240495993 |
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Type | SNP |
SNP Alleles | K |
5' Flanking Sequence | GTTAGCAAAATGCCAATCCATTACCCTCCTCTCCA |
3' Flanking Sequence | AGGACTTAAAAGCTCTTGCTTAGAACAACTTTTCT |
Species | Rubus spp. |
Publication | [view all] |
Contact | Sara Montanari
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Comment | SNP from Rubus occidentalis |
Libraries
Library Name | Type |
13K SNP Array for Rubus | SNP_chip |
Alignments
The following features are aligned
Feature Name | Type | Location | Analysis | Reference |
Ro02 | chromosome | Ro02:1234773..1234773 . | Rubus occidentalis Whole Genome v3.0 Assembly & Annotation | Montanari S, Deng C, Koot E, Bassil NV, Zurn JD, Morrison-Whittle P, Worthington ML, Aryal R, Ashrafi H, Pradelles J, Wellenreuther M, Chagné D. A multiplexed plant-animal SNP array for selective breeding and species conservation applications.. G3 (Bethesda, Md.). 2023 Aug 11. |
Publications
Year | Publication |
2023 | Montanari S, Deng C, Koot E, Bassil NV, Zurn JD, Morrison-Whittle P, Worthington ML, Aryal R, Ashrafi H, Pradelles J, Wellenreuther M, Chagné D. A multiplexed plant-animal SNP array for selective breeding and species conservation applications. G3 (Bethesda, Md.). 2023 Aug 11. DOI: 10.1093/g3journal/jkad170 |
Sequence
>Rub_AX-566097427 ID=Rub_AX-566097427; Name=Rub_AX-566097427; organism=Rubus spp.; type=genetic_marker; length=71bp GTTAGCAAAATGCCAATCCATTACCCTCCTCTCCAKAGGACTTAAAAGCT CTTGCTTAGAACAACTTTTCT
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