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Marker Overview
| Name | Rub_AX-566097915 |
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| dbSNP ID | N/A |
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| SNP Array ID | | 13K SNP Array for Rubus: | Affx-1240496459 |
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| Type | SNP |
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| SNP Alleles | Y |
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| 5' Flanking Sequence | ATACTCCGTTGCCCAACCACCCACCTATTGATAAA |
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| 3' Flanking Sequence | ATAAAAAACAACATAAATATTTCTTGATAAATAAC |
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| Species | Rubus spp. |
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| Publication | [view all] |
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| Contact | Sara Montanari
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| Comment | SNP from Rubus occidentalis |
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Libraries
| Library Name | Type |
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| 13K SNP Array for Rubus | SNP_chip |
Alignments
The following features are aligned
| Feature Name | Type | Location | Analysis | Reference |
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| Ro02 | chromosome | Ro02:15874422..15874422 . | Rubus occidentalis Whole Genome v3.0 Assembly & Annotation | Montanari S, Deng C, Koot E, Bassil NV, Zurn JD, Morrison-Whittle P, Worthington ML, Aryal R, Ashrafi H, Pradelles J, Wellenreuther M, Chagné D. A multiplexed plant-animal SNP array for selective breeding and species conservation applications.. G3 (Bethesda, Md.). 2023 Aug 11. |
Publications
| Year | Publication |
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| 2023 | Montanari S, Deng C, Koot E, Bassil NV, Zurn JD, Morrison-Whittle P, Worthington ML, Aryal R, Ashrafi H, Pradelles J, Wellenreuther M, Chagné D. A multiplexed plant-animal SNP array for selective breeding and species conservation applications. G3 (Bethesda, Md.). 2023 Aug 11. DOI: 10.1093/g3journal/jkad170 |
Sequence
>Rub_AX-566097915 ID=Rub_AX-566097915; Name=Rub_AX-566097915; organism=Rubus spp.; type=genetic_marker; length=71bp
ATACTCCGTTGCCCAACCACCCACCTATTGATAAAYATAAAAAACAACAT
AAATATTTCTTGATAAATAAC
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