GWAS0001226 | GDR

Annotated Terms

Genome Location

GWAS Overview


GWAS Label	GWAS0001226 [ MapViewer ]
Published Symbol	epicatechin
Trait Name	epicatechin content
Trait Alias	N/A
GWAS Marker	GDsnp00893
GWAS Study	Apple_phytochemicals_GWAS_Kumar_2022
Genome Assembly	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Statistical Mothod	MLM
Experimental Model	N/A
GWAS Panel	New_Zealand_apples_Hawke's_Bay_344
LOD	N/A
P Value	1.3E-7
R2	N/A
Unique key	3626-epicatechinGDsnp00893MLM
Comments	N/A

Annotated Terms

The following terms have been associated with this GWAS:

Vocabulary: **Rosaceae Trait Ontology**
Term	Definition
MAIN:000201215	epicatechin content

Genome Location


Name	Type	Location	Analysis	MapViewer
MDC021097.303	contig	MDC021097.303:20836..20836	Malus x domestica Whole Genome v1.0 Assembly & Annotation	View
Chr09	chromosome	Chr09:8536504..8536504	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	View
Chr09	chromosome	Chr09:8536454..8536554	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	View

Publications


Year	Publication
2022	Kumar S, Molloy C, Hunt M, Deng CH, Wiedow C, Andre C, Dare A, McGhie T. GWAS provides new insights into the genetic mechanisms of phytochemicals production and red skin colour in apple.. Horticulture research. 2022; 9:uhac218.

Germplasm


Stock Name	Type
New_Zealand_apples_Hawke's_Bay_344	panel