GWAS0001260 | GDR

Annotated Terms

Genome Location

GWAS Overview


GWAS Label	GWAS0001260 [ MapViewer ]
Published Symbol	3-hydroxyphloridzin
Trait Name	3-hydroxyphloridzin content
Trait Alias	N/A
GWAS Marker	RosBREEDSNP_SNP_GA_18791535_Lg1_02731_MAF40_MDP0000186097_exon1
GWAS Study	Apple_phytochemicals_GWAS_Kumar_2022
Genome Assembly	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Statistical Mothod	MLM
Experimental Model	N/A
GWAS Panel	New_Zealand_apples_Hawke's_Bay_344
LOD	N/A
P Value	4.6E-7
R2	N/A
Unique key	3626-3-hydroxyphloridzinRosBREEDSNP_SNP_GA_18791535_Lg1_02731_MAF40_MDP0000186097_exon1MLM
Comments	N/A

Annotated Terms

The following terms have been associated with this GWAS:

Vocabulary: **Rosaceae Trait Ontology**
Term	Definition
28:3-hydroxyphloridzin content	3-hydroxyphloridzin content

Genome Location


Name	Type	Location	Analysis	MapViewer
MDC018999.174	contig	MDC018999.174:6044..6044	Malus x domestica Whole Genome v1.0 Assembly & Annotation	View
Chr01	chromosome	Chr01:22717183..22717183	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	View

Publications


Year	Publication
2022	Kumar S, Molloy C, Hunt M, Deng CH, Wiedow C, Andre C, Dare A, McGhie T. GWAS provides new insights into the genetic mechanisms of phytochemicals production and red skin colour in apple.. Horticulture research. 2022; 9:uhac218.

Germplasm


Stock Name	Type
New_Zealand_apples_Hawke's_Bay_344	panel