LOX5B, KC706491.1-LOX5B.m1 (mRNA) Malus x domestica

Transcript Overview


Name	LOX5B
Unique Name	KC706491.1-LOX5B.m1
Type	mRNA
Organism	Malus x domestica (Apple)
Source	genbank
Product	lipoxygenase

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
KC706491.1-LOX5B.m1-cds1	KC706491.1-LOX5B.m1-cds1	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
LOX5B	KC706491.1-LOX5B.p1	Malus x domestica	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	485451134
nuccore	KC706491.1

Alignments

Feature Name	Type	Location	Analysis
KC706491	region	KC706491:1..2745+	NCBI Rosaceae gene and mRNA sequences
Chr02	chromosome	Chr02:37219740..37227177+	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr2	chromosome	chr2:36136033..36143453+	Malus x domestica Whole Genome v1.0 Assembly & Annotation

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KC706491:1..2745+
coding sequence from alignment at KC706491:1..2745+

mRNA sequence

>KC706491.1-LOX5B.m1 ID=KC706491.1-LOX5B.m1; Name=LOX5B; organism=Malus x domestica; type=mRNA; length=2745bp
atgatgacatctcagctgcagaaagccaactatgctccatccttccctct
cttaccaaaatcctctattaaccctaatcatctgattaagcatggtagcc
cctccctgatcaacatccttccgcgccaccatgtccatcaaaatcgtaat
aagaaaaactcctcatccttggtgatccgtgccacttctagtgatctcaa
accatcacccgtatcagtgtccacggttacttctacggaaaataacgcgt
ttacggtaaaggctttggtgacggtgacagtaacaggagggttactctcc
agcataggcttgactcggcccctcgatgacttaaccgacttgctcggaaa
aactttgcttttggagcttgttagcgccgagcttgaccccaagacggggt
tggagaaagaaacagtgaaggggtatgggcacaaagcgagccacaaggat
gacgaggtggtgtatgaggctactttcaccatcccagcagggtttggaga
ggttggagctgttcaggtagagaatgaacaccacaaggagatgttcatca
agagcatcgacctcaacggcttcccaaacggcactgttaatgttccgtgt
aatacctgggctcattccaaatttgacaacccagagaagagaattttttt
cactaacaagtcgtacctaccatcagagacaccgagtgggttgaagaagc
taagagaatcggagctgcagactttgcgaggaaatggagagggccaaaga
aaaacatctgataggatctacgattatgacacttataatgacattggcga
tccggacagcaaagatgaactggctaggcctgtccttggtggcaaagatc
acccgtacccgaggcgctgcagaactggaagaccacgctctaaaaaggat
cctttgtcggaacaaagaagcagcagtgtgtatgtaccaagagatgaagc
ttttgcagacgtgaaacagctgacattttcaacaaagaccctgaaatctg
tgctacatgctttgctcccttcgctagagacagcacttcttgacccagac
ctaggatttccatacttcacagccatagattcactgtataacgaaggagt
cacgttacctaagccaaagactggtgggtttttccagacaatcatcccaa
ggctagtcaagaccattatagatggtggagatgatcttttgctctttgag
acccccgaaataatagaccgtgataaattttcttggtttagagatgaaga
attttcccggcaaactcttgctggtcttaatccatatagtatcgagctag
tgacggaatggccattgaaaagtaaactcaaccccgagatttatggcccc
cctgaatcattgatcacaacagaactggttgagaaggagatcaaaggttg
tatgactgtcaatgaggccttggaaaggaagaagatgtttattttggatt
accatgatctgctcatgccttacgtgaacaaagtaagagagattgaaggt
accacactgtatggttctcgtacactattcttcctcactgcagatgggac
actgaggcctgttgccattgaactcactcgaccgcctgttggtgacaagc
cacaatggaagcaagtctttactccaacctgggatgccaccggttgctgg
ctctggaggcttgctaaagcccacgttcttgcacatgatgccggctatca
tcagcttgtcgtgcactggctgaggactcattgctgtacagagccatata
taattgctgctaatcgacaattaagcgcaatgcatcccatctacagactt
ctgcaccctcatttccggtatacaatggaaatcaatgctctggctcgaga
aagcctcatcaatgcaggtggagtcattgagagcaccttttcacctggaa
agtactccatagagttgagttctgccgcttatgaccagctttggcgcttt
gacatggaagctttgccagcagatctcatcagaaggggaatggcagttga
ggattctacagctgagcatggcttgaagctagcaattgaagactacccat
ttgcaaatgatggcctcatcctgtgggatgccattaaggagtgggtgagt
gattatgtgaaccactactatacagacccaaatcttattgagtctgatac
agagcttcaaggttggtggacagaagttagaaccaagggccatgcagaca
agaaagatgagccatggtggcctgttttgaaaaccccggaaaatctgatt
cacattttgacaaccataatttgggtaacagcaggtcaccatgcagcagt
gaactttggccagtacatgtatgctggatatttccctaaccgccctacaa
ttgctcgaaccaatatgccaactgaagatccatctgatgagtatttccag
aacttcttgaagaaaccagaaatggctctactgatgtgcttcccctcaca
gattcaagcaacaaaagttatggccgtcttagatgtgctttcgaatcatt
cacccgatgaggagtatattggtgggaatccagagtcatcatgggctgaa
aatcctgtcatcaaggccgcatatgagaaattcaatggcaatttgaagag
gctagaaggaattattgatgagaggaataccaatttgaaactgaaaaaca
gagttggagcaggcgtcgttccatatgagcttttgaagccattctcaaca
tccggtgtcacaggaatgggagttccaaacagcatctccatctaa

protein sequence of LOX5B

>KC706491.1-LOX5B.p1 ID=KC706491.1-LOX5B.p1; Name=LOX5B; organism=Malus x domestica; type=polypeptide; length=914bp
MMTSQLQKANYAPSFPLLPKSSINPNHLIKHGSPSLINILPRHHVHQNRN
KKNSSSLVIRATSSDLKPSPVSVSTVTSTENNAFTVKALVTVTVTGGLLS
SIGLTRPLDDLTDLLGKTLLLELVSAELDPKTGLEKETVKGYGHKASHKD
DEVVYEATFTIPAGFGEVGAVQVENEHHKEMFIKSIDLNGFPNGTVNVPC
NTWAHSKFDNPEKRIFFTNKSYLPSETPSGLKKLRESELQTLRGNGEGQR
KTSDRIYDYDTYNDIGDPDSKDELARPVLGGKDHPYPRRCRTGRPRSKKD
PLSEQRSSSVYVPRDEAFADVKQLTFSTKTLKSVLHALLPSLETALLDPD
LGFPYFTAIDSLYNEGVTLPKPKTGGFFQTIIPRLVKTIIDGGDDLLLFE
TPEIIDRDKFSWFRDEEFSRQTLAGLNPYSIELVTEWPLKSKLNPEIYGP
PESLITTELVEKEIKGCMTVNEALERKKMFILDYHDLLMPYVNKVREIEG
TTLYGSRTLFFLTADGTLRPVAIELTRPPVGDKPQWKQVFTPTWDATGCW
LWRLAKAHVLAHDAGYHQLVVHWLRTHCCTEPYIIAANRQLSAMHPIYRL
LHPHFRYTMEINALARESLINAGGVIESTFSPGKYSIELSSAAYDQLWRF
DMEALPADLIRRGMAVEDSTAEHGLKLAIEDYPFANDGLILWDAIKEWVS
DYVNHYYTDPNLIESDTELQGWWTEVRTKGHADKKDEPWWPVLKTPENLI
HILTTIIWVTAGHHAAVNFGQYMYAGYFPNRPTIARTNMPTEDPSDEYFQ
NFLKKPEMALLMCFPSQIQATKVMAVLDVLSNHSPDEEYIGGNPESSWAE
NPVIKAAYEKFNGNLKRLEGIIDERNTNLKLKNRVGAGVVPYELLKPFST
SGVTGMGVPNSISI

mRNA from alignment at KC706491:1..2745+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>KC706491.1-LOX5B.m1 ID=KC706491.1-LOX5B.m1; Name=LOX5B; organism=Malus x domestica; type=mRNA; length=2745bp; location=Sequence derived from: KC706491:1..2745+ (Malus x domestica
atgatgacatctcagctgcagaaagccaactatgctccatccttccctct
cttaccaaaatcctctattaaccctaatcatctgattaagcatggtagcc
cctccctgatcaacatccttccgcgccaccatgtccatcaaaatcgtaat
aagaaaaactcctcatccttggtgatccgtgccacttctagtgatctcaa
accatcacccgtatcagtgtccacggttacttctacggaaaataacgcgt
ttacggtaaaggctttggtgacggtgacagtaacaggagggttactctcc
agcataggcttgactcggcccctcgatgacttaaccgacttgctcggaaa
aactttgcttttggagcttgttagcgccgagcttgaccccaagacggggt
tggagaaagaaacagtgaaggggtatgggcacaaagcgagccacaaggat
gacgaggtggtgtatgaggctactttcaccatcccagcagggtttggaga
ggttggagctgttcaggtagagaatgaacaccacaaggagatgttcatca
agagcatcgacctcaacggcttcccaaacggcactgttaatgttccgtgt
aatacctgggctcattccaaatttgacaacccagagaagagaattttttt
cactaacaagtcgtacctaccatcagagacaccgagtgggttgaagaagc
taagagaatcggagctgcagactttgcgaggaaatggagagggccaaaga
aaaacatctgataggatctacgattatgacacttataatgacattggcga
tccggacagcaaagatgaactggctaggcctgtccttggtggcaaagatc
acccgtacccgaggcgctgcagaactggaagaccacgctctaaaaaggat
cctttgtcggaacaaagaagcagcagtgtgtatgtaccaagagatgaagc
ttttgcagacgtgaaacagctgacattttcaacaaagaccctgaaatctg
tgctacatgctttgctcccttcgctagagacagcacttcttgacccagac
ctaggatttccatacttcacagccatagattcactgtataacgaaggagt
cacgttacctaagccaaagactggtgggtttttccagacaatcatcccaa
ggctagtcaagaccattatagatggtggagatgatcttttgctctttgag
acccccgaaataatagaccgtgataaattttcttggtttagagatgaaga
attttcccggcaaactcttgctggtcttaatccatatagtatcgagctag
tgacggaatggccattgaaaagtaaactcaaccccgagatttatggcccc
cctgaatcattgatcacaacagaactggttgagaaggagatcaaaggttg
tatgactgtcaatgaggccttggaaaggaagaagatgtttattttggatt
accatgatctgctcatgccttacgtgaacaaagtaagagagattgaaggt
accacactgtatggttctcgtacactattcttcctcactgcagatgggac
actgaggcctgttgccattgaactcactcgaccgcctgttggtgacaagc
cacaatggaagcaagtctttactccaacctgggatgccaccggttgctgg
ctctggaggcttgctaaagcccacgttcttgcacatgatgccggctatca
tcagcttgtcgtgcactggctgaggactcattgctgtacagagccatata
taattgctgctaatcgacaattaagcgcaatgcatcccatctacagactt
ctgcaccctcatttccggtatacaatggaaatcaatgctctggctcgaga
aagcctcatcaatgcaggtggagtcattgagagcaccttttcacctggaa
agtactccatagagttgagttctgccgcttatgaccagctttggcgcttt
gacatggaagctttgccagcagatctcatcagaaggggaatggcagttga
ggattctacagctgagcatggcttgaagctagcaattgaagactacccat
ttgcaaatgatggcctcatcctgtgggatgccattaaggagtgggtgagt
gattatgtgaaccactactatacagacccaaatcttattgagtctgatac
agagcttcaaggttggtggacagaagttagaaccaagggccatgcagaca
agaaagatgagccatggtggcctgttttgaaaaccccggaaaatctgatt
cacattttgacaaccataatttgggtaacagcaggtcaccatgcagcagt
gaactttggccagtacatgtatgctggatatttccctaaccgccctacaa
ttgctcgaaccaatatgccaactgaagatccatctgatgagtatttccag
aacttcttgaagaaaccagaaatggctctactgatgtgcttcccctcaca
gattcaagcaacaaaagttatggccgtcttagatgtgctttcgaatcatt
cacccgatgaggagtatattggtgggaatccagagtcatcatgggctgaa
aatcctgtcatcaaggccgcatatgagaaattcaatggcaatttgaagag
gctagaaggaattattgatgagaggaataccaatttgaaactgaaaaaca
gagttggagcaggcgtcgttccatatgagcttttgaagccattctcaaca
tccggtgtcacaggaatgggagttccaaacagcatctccatctaa

Coding sequence (CDS) from alignment at KC706491:1..2745+

>KC706491.1-LOX5B.m1 ID=KC706491.1-LOX5B.m1; Name=LOX5B; organism=Malus x domestica; type=CDS; length=2745bp; location=Sequence derived from: KC706491:1..2745+ (Malus x domestica
atgatgacatctcagctgcagaaagccaactatgctccatccttccctct
cttaccaaaatcctctattaaccctaatcatctgattaagcatggtagcc
cctccctgatcaacatccttccgcgccaccatgtccatcaaaatcgtaat
aagaaaaactcctcatccttggtgatccgtgccacttctagtgatctcaa
accatcacccgtatcagtgtccacggttacttctacggaaaataacgcgt
ttacggtaaaggctttggtgacggtgacagtaacaggagggttactctcc
agcataggcttgactcggcccctcgatgacttaaccgacttgctcggaaa
aactttgcttttggagcttgttagcgccgagcttgaccccaagacggggt
tggagaaagaaacagtgaaggggtatgggcacaaagcgagccacaaggat
gacgaggtggtgtatgaggctactttcaccatcccagcagggtttggaga
ggttggagctgttcaggtagagaatgaacaccacaaggagatgttcatca
agagcatcgacctcaacggcttcccaaacggcactgttaatgttccgtgt
aatacctgggctcattccaaatttgacaacccagagaagagaattttttt
cactaacaagtcgtacctaccatcagagacaccgagtgggttgaagaagc
taagagaatcggagctgcagactttgcgaggaaatggagagggccaaaga
aaaacatctgataggatctacgattatgacacttataatgacattggcga
tccggacagcaaagatgaactggctaggcctgtccttggtggcaaagatc
acccgtacccgaggcgctgcagaactggaagaccacgctctaaaaaggat
cctttgtcggaacaaagaagcagcagtgtgtatgtaccaagagatgaagc
ttttgcagacgtgaaacagctgacattttcaacaaagaccctgaaatctg
tgctacatgctttgctcccttcgctagagacagcacttcttgacccagac
ctaggatttccatacttcacagccatagattcactgtataacgaaggagt
cacgttacctaagccaaagactggtgggtttttccagacaatcatcccaa
ggctagtcaagaccattatagatggtggagatgatcttttgctctttgag
acccccgaaataatagaccgtgataaattttcttggtttagagatgaaga
attttcccggcaaactcttgctggtcttaatccatatagtatcgagctag
tgacggaatggccattgaaaagtaaactcaaccccgagatttatggcccc
cctgaatcattgatcacaacagaactggttgagaaggagatcaaaggttg
tatgactgtcaatgaggccttggaaaggaagaagatgtttattttggatt
accatgatctgctcatgccttacgtgaacaaagtaagagagattgaaggt
accacactgtatggttctcgtacactattcttcctcactgcagatgggac
actgaggcctgttgccattgaactcactcgaccgcctgttggtgacaagc
cacaatggaagcaagtctttactccaacctgggatgccaccggttgctgg
ctctggaggcttgctaaagcccacgttcttgcacatgatgccggctatca
tcagcttgtcgtgcactggctgaggactcattgctgtacagagccatata
taattgctgctaatcgacaattaagcgcaatgcatcccatctacagactt
ctgcaccctcatttccggtatacaatggaaatcaatgctctggctcgaga
aagcctcatcaatgcaggtggagtcattgagagcaccttttcacctggaa
agtactccatagagttgagttctgccgcttatgaccagctttggcgcttt
gacatggaagctttgccagcagatctcatcagaaggggaatggcagttga
ggattctacagctgagcatggcttgaagctagcaattgaagactacccat
ttgcaaatgatggcctcatcctgtgggatgccattaaggagtgggtgagt
gattatgtgaaccactactatacagacccaaatcttattgagtctgatac
agagcttcaaggttggtggacagaagttagaaccaagggccatgcagaca
agaaagatgagccatggtggcctgttttgaaaaccccggaaaatctgatt
cacattttgacaaccataatttgggtaacagcaggtcaccatgcagcagt
gaactttggccagtacatgtatgctggatatttccctaaccgccctacaa
ttgctcgaaccaatatgccaactgaagatccatctgatgagtatttccag
aacttcttgaagaaaccagaaatggctctactgatgtgcttcccctcaca
gattcaagcaacaaaagttatggccgtcttagatgtgctttcgaatcatt
cacccgatgaggagtatattggtgggaatccagagtcatcatgggctgaa
aatcctgtcatcaaggccgcatatgagaaattcaatggcaatttgaagag
gctagaaggaattattgatgagaggaataccaatttgaaactgaaaaaca
gagttggagcaggcgtcgttccatatgagcttttgaagccattctcaaca
tccggtgtcacaggaatgggagttccaaacagcatctccatctaa